Protein Alignment pAbp and Sxl

DIOPT Version :9

• Sequence 1: NP_476667.1
• Gene: pAbp / 37070
• FlyBaseID: FBgn0265297
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_001259303.1
• Gene: Sxl / 3772180
• FlyBaseID: FBgn0264270
• Length: 722
• Species: Drosophila melanogaster
• Alignment Length: 636
• Identity: 123/636 - (19%)
• Similarity: 225/636 - (35%)
• Gaps: 155/636 - (24%)

  Fly     3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDL 67
            :|.|..||||:.:..|:..|.:.||:.:.|:.||..|..|.|||:|:|....|::||:..:|...
  Fly   118 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGIT 182

  Fly    68 VRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE-KGNSKG 131
            ||||.:::.:::  |........|:::.||.|.|.:..:...|..:|:|:...:..|: .|..:|
  Fly   183 VRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRG 245

  Fly   132 YGFVHFETEEAANTSIDKVNGMLLNG-------------KKVYVGKFIPR--------------- 168
            ..||.:...|.|..:|..:|.::..|             .|.....|:.:
  Fly   246 VAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAEEHGKAKAAHFMSQMGVVPANVPPPPPQP 310

  Fly   169 ----------KEREKELGEKAKLFTNVY-------VKNFTEDFDDEKLKEFFEPYGKITSYKVMS 216
                      ..|:..:.:...||..:.       .:||.:..|....:::..||. :|..:...
  Fly   311 PAHMAAAFNMMHRDGAMEKLRSLFDAICDAIFGLDSENFADLLDGLYRRKYHYPYLXLTPQQQQQ 375

  Fly   217 KEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRH 281
            ....:.:..||     |.::..::...||.|  ....||..:..::..:||.|.
  Fly   376 LLQHQQQALGF-----TSSSNNSIGNGNGND--NNMLLYHQQYHQQQTQQQRLG----------- 422

  Fly   282 ESVFGVNLYVKNLDDTIDDDRLRIAFSPYG---NITSAKVMTDEEGRSKGFGFVCFNAASEATCA 343
                  |:...|:             ||.|   ||.::..........:..|....:...|....
  Fly   423 ------NVAAHNI-------------SPNGSNNNINTSNTNNINFNTIRQNGVAALHYLQEQLQL 468

  Fly   344 VTELNGRVVGSKPLYVALAQ--RKEERKAH-------LASQYMRHMTGMRMQQLGQIYQPNAASG 399
            ....:.:....:||.:..:.  :::.|::|       |.:|.:.............  |.|:.:|
  Fly   469 QQPQDQQSQQQQPLTMPSSPPFQQQSRQSHHNGSSSTLGNQLLAISNNNSFNNNSN--QSNSFTG 531

  Fly   400 FFVPTLPSNQRFFGSQVATQMRNTPRWVPQVRPPAAIQGVQAGAAAAGGF-QGTAGAVPT---QF 460
            .:     ||...|.|..|....|.|.                ...::|.| ..:..:.||   .|
  Fly   532 NY-----SNGSAFTSNGAISGSNFPN----------------NPTSSGNFTNNSTNSNPTNSGHF 575

  Fly   461 RSAAAGARGAQPQVQGTH----------AAAAAANNMRNTGARAITGQQTAAPNMQIPGAQIAGG 515
            .|..||:......:.|::          :.||:::|..|..|.:....:..:       :.:.|.
  Fly   576 ASNLAGSSNFTNHLSGSNNYTNSNGNFTSNAASSSNFSNNAASSTNYSKNCS-------SGVVGN 633

  Fly   516 AQQRTSNYKYTSNMRNPPV-PQ-------------LHQTQPIPQQLQGKNS 552
            :...:.:.|:|:|..|... ||             |||.....|||...||
  Fly   634 SDPDSCSRKHTTNTNNHHTSPQHDFSFNMSTTEQELHQQTLKLQQLHLNNS 684

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pAbp	NP_476667.1	PABP-1234	2..625	CDD:130689	123/636 (19%)
Sxl	NP_001259303.1	RRM1_SXL	117..197	CDD:241093	29/80 (36%)
		RRM2_Hu_like	203..281	CDD:240822	18/77 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR24012
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	2.010