DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pAbp and bru1

DIOPT Version :9

Sequence 1:NP_476667.1 Gene:pAbp / 37070 FlyBaseID:FBgn0265297 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001260403.1 Gene:bru1 / 34648 FlyBaseID:FBgn0000114 Length:810 Species:Drosophila melanogaster


Alignment Length:469 Identity:108/469 - (23%)
Similarity:171/469 - (36%) Gaps:123/469 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLV 68
            ::||.:|:.::||.|.:.|...|.|.||.|.||..|..|.|..:|.|.....|.:|.|.::....
  Fly   359 MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKT 423

  Fly    69 RN---KPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSK 130
            .|   .||::..:..:....|    .:|:..|::.::...:...|...|.|..|.|..|:.|.||
  Fly   424 LNGMYHPIQMKPADSENRNER----KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSK 484

  Fly   131 GYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIP--------RKEREKE------------- 174
            |..||.|.|:.||.::| ||.   |:..|:..|...|        :||:|::             
  Fly   485 GCAFVTFATKHAAISAI-KVT---LSQNKIMEGCTSPLVVKFADTQKEKEQKKIQQIQANLWNLA 545

  Fly   175 ------LGEKAKLFTNVYVKNFTEDFDDEKLKEFFEP-----YGKITSYKVMSKEDGKSKGF--- 225
                  ||:.|...|...:.|..:           :|     ...||...:...:..::.|.   
  Fly   546 SNINIPLGQTATSVTTPILPNPPQ-----------QPSPVLGADAITPASIQLLQQLQAVGLQHQ 599

  Fly   226 ------GFVAFETTEAAEAAVQALNG--------------------------------------- 245
                  |..|.:::.|.:.:..|..|                                       
  Fly   600 LLQALTGLGAQQSSSATDTSAVAAAGLLTPMTVQNLAAIAAMTQPSLSNAAAAAAAATSPGSAQL 664

  Fly   246 --------KDMGEGKSLYVARAQKKAE------------RQQELKRKFEELKQKRHESVFGVNLY 290
                    .|.....|.|::.|....:            ....|.........|:.|...|.||:
  Fly   665 TNTAALLWSDPNPMASAYMSTAAGLPQFGSASALSTSPLASVALSAAAAAAAGKQIEGPEGCNLF 729

  Fly   291 VKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVGS 354
            :.:|.....|..|...|.|:||:.||||..|:: ..||.||||.|:....|..|:..:||..||:
  Fly   730 IYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT 794

  Fly   355 KPLYVALAQRKEER 368
            |.|.|.|.:.|:.:
  Fly   795 KRLKVQLKKPKDSK 808

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pAbpNP_476667.1 PABP-1234 2..625 CDD:130689 108/469 (23%)
bru1NP_001260403.1 RRM1_CELF1_2_Bruno 356..437 CDD:241075 25/77 (32%)
ELAV_HUD_SF 359..808 CDD:273741 108/467 (23%)
RRM2_Bruno_like 443..524 CDD:241080 26/88 (30%)
RRM3_Bruno_like 722..800 CDD:241084 30/77 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24012
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.