Protein Alignment pAbp and Rbp9

DIOPT Version :9

• Sequence 1: NP_476667.1
• Gene: pAbp / 37070
• FlyBaseID: FBgn0265297
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_001259974.1
• Gene: Rbp9 / 33498
• FlyBaseID: FBgn0010263
• Length: 684
• Species: Drosophila melanogaster
• Alignment Length: 607
• Identity: 138/607 - (22%)
• Similarity: 218/607 - (35%)
• Gaps: 166/607 - (27%)

  Fly    78 SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE-KGNSKGYGFVHFETEE 141
            ::.||..      |:.:..|.:.:....|...|.:||.:.|||:..|: .|.|.|||||::..:|
  Fly   104 NEPDPKT------NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQE 162

  Fly   142 AANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
            .|..:|:.:||:.|..|.:.|.  |.|...|...|      .|:||....::.....|:..|.||
  Fly   163 DAEKAINALNGLRLQNKTIKVS--IARPSSESIKG------ANLYVSGLPKNMTQSDLESLFSPY 219

  Fly   207 GKITSYKVMSKE-DGKSKGFGFVAFETTEAAEAAVQALNG---------------------KDMG 249
            |||.:.:::... .|.|||.||:.|:....|:.|::.|||                     |:..
  Fly   220 GKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPSSNKNSM 284

  Fly   250 EGKSLYVA-------RA------------------QKKAERQQELKRKFEELK---------QKR 280
            :..:.|:|       ||                  ...|.|...:..::..|.         |..
  Fly   285 QPLAAYIAPQNTRGGRAFPANAAAGAAAAAAAAAIHPNAGRYSSVISRYSPLTSDLITNGMIQGN 349

  Fly   281 HESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTD-EEGRSKGFGFVCFNAASEATCAV 344
            ..:..|..::|.||....:::.|...|.|:|.:.|.||:.| :..:.||||||......||..|:
  Fly   350 TIASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAI 414

  Fly   345 TELNGRVVGSKPLYVALAQRKEER----------------KAHLASQYMRHMTGMRMQQLGQI-Y 392
            ..|||..:|::.|.|:....|.::                .|.||:..:..........:|.| .
  Fly   415 QSLNGYTLGNRVLQVSFKTNKNKQTXLLTKLAAVVNANAAAAALAANGLVLHNHHHHSNIGSINN 479

  Fly   393 QPNAASGFFVPTLP--------SNQRFFGSQVATQMRNTPRWVPQVRPPAAIQGVQAGAAAAGGF 449
            ..|.::|......|        ||.|......:|.  ||.:     :.||:....|...|.
  Fly   480 NSNNSNGCSAAAFPLGKYVNHSSNNRQHNINNSTS--NTSK-----QKPASTSNKQQSMAP---- 533

  Fly   450 QGTAGAVPTQFRSAAAGARGAQPQVQGTHAAAAAANNMRNTGARAITGQQTAAPNMQIPGAQIAG 514
                   |.:..|:.|...|        ..||.||.|..::...|.:|.           |...|
  Fly   534 -------PKRLASSTAATTG--------DLAATAATNSSSSSHSASSGD-----------AGATG 572

  Fly   515 GAQQRTSNYKYTSNMRNPPVPQLHQTQPIPQQLQGKNSEKLIASLLANAKPQEQKQILGERLYPM 579
            .|...:|:...|:|                      |..|.....:.| |||.|.::|.::|
  Fly   573 TAASSSSSSSSTNN----------------------NILKTSTKFIYN-KPQNQYELLQQQL--- 611

  Fly   580 IEHMHANLAGKITGMLLEIENS 601
                  .|..:....|..:.||
  Fly   612 ------QLQQEFAQFLTNVANS 627

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pAbp	NP_476667.1	PABP-1234	2..625	CDD:130689	138/607 (23%)
Rbp9	NP_001259974.1	ELAV_HUD_SF	107..438	CDD:273741	90/344 (26%)
		RRM1_Hu	109..186	CDD:241094	25/84 (30%)
		RRM2_Hu	196..274	CDD:241096	22/77 (29%)
		RRM3_Hu	355..432	CDD:240823	27/76 (36%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439614
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840