Protein Alignment pAbp and pabpc1l

DIOPT Version :9

• Sequence 1: NP_476667.1
• Gene: pAbp / 37070
• FlyBaseID: FBgn0265297
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_956133.1
• Gene: pabpc1l / 327625
• ZFINID: ZDB-GENE-030131-5836
• Length: 620
• Species: Danio rerio
• Alignment Length: 647
• Identity: 358/647 - (55%)
• Similarity: 447/647 - (69%)
• Gaps: 56/647 - (8%)

  Fly     1 MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNF 65
            :||||||||..||.|:.|:.|||.||.::||||||||||||||||||:|||||||||.||||||:
Zfish    10 LASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTMNY 74

  Fly    66 DLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSK 130
            ::::.:|||||||||||.||:|||||:||||:|.:|||||:|||||||||||||||..||.| ||
Zfish    75 EVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG-SK 138

  Fly   131 GYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFD 195
            |||||||||:||||.:|:.:||||||.:||:||.|..|||||.|:|.||..|||||:|||.||.|
Zfish   139 GYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDID 203

  Fly   196 DEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQ 260
            .||||..|..:||..|..||:.|.|:|:|||||.|.....|..||..:|||:: .|:.|||.|||
Zfish   204 SEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKEL-NGRVLYVGRAQ 267

  Fly   261 KKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR 325
            |:.|||.|||||||::||:|.:...|||||||||||:|||::||..|:|||.||||||||| .|.
Zfish   268 KRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTD-GGH 331

  Fly   326 SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRM---QQ 387
            |:|||||||::..|||.||||:|||:|.:||||||||||||||||.|.:||::.:..:|.   ..
Zfish   332 SRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYIQRLASIRAIPGPA 396

  Fly   388 LGQIYQPNAASGFFVPTLPSNQRFFGSQVATQMRNTPRW---VPQVRPPAAIQGVQAGAAAAGGF 449
            :...||  ..||:::.::|..:.|:.:  ...:|..|||   .|:.:.|...|.|:.
Zfish   397 IPTTYQ--QGSGYYMTSVPQVRSFYNA--VPNLRPAPRWAFQAPRTQGPFPAQFVRQ-------- 449

  Fly   450 QGTAGAVPTQFRSAAAGARGAQPQVQGTHAAAAAANNMRNTGARAITGQQTAAPNMQIPGAQIAG 514
                 |||.:..:..:..|.|..||.          ::.||...|..|.|||       |.:.||
Zfish   450 -----AVPRRPSTTISTVRQASTQVP----------HINNTQRMANIGTQTA-------GGRAAG 492

  Fly   515 GAQQRTSNYKYTSNMR------NPPVPQLHQ----TQPIPQQLQGKNSEKLIASLLANAKPQEQK 569
            .|.:..|.|||::.:|      |.|.|.:||    |:|   .:..|..|.|.||:||.|..:|||
Zfish   493 TAVRGVSQYKYSAGVRNVQQVINAPAPVVHQVVQNTEP---AVHMKGQEPLTASMLAAAPLKEQK 554

  Fly   570 QILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQVHRVTE 631
            |:|||||||:|:.:|..||||||||||||:|||||||:|..|:|.|||||||||||.|:..|
Zfish   555 QLLGERLYPLIQILHPALAGKITGMLLEIDNSELLHMLESPESLHAKVEEAVAVLQAHQAKE 616

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pAbp	NP_476667.1	PABP-1234	2..625	CDD:130689	354/638 (55%)
pabpc1l	NP_956133.1	PABP-1234	11..610	CDD:130689	354/638 (55%)
		RRM1_I_PABPs	12..91	CDD:240824	58/78 (74%)
		RRM2_I_PABPs	97..172	CDD:240825	57/75 (76%)
		RRM3_I_PABPs	190..269	CDD:240826	43/79 (54%)
		RRM4_I_PABPs	293..370	CDD:240827	57/77 (74%)
		PABP	542..609	CDD:279051	48/66 (73%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	122	1.000	Domainoid score	I5579
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	696	1.000	Inparanoid score	I658
OMA	1	1.010	-	-		QHG53624
OrthoDB	1	1.010	-	-		D1027234at2759
OrthoFinder	1	1.000	-	-		FOG0000294
OrthoInspector	1	1.000	-	-		otm25179
orthoMCL	1	0.900	-	-		OOG6_100425
Panther	1	1.100	-	-	LDO	PTHR24012
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X269
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	12	11.980