DRSC/TRiP Functional Genomics Resources

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Protein Alignment pAbp and pabpc4

DIOPT Version :9

Sequence 1:NP_476667.1 Gene:pAbp / 37070 FlyBaseID:FBgn0265297 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_958453.1 Gene:pabpc4 / 321035 ZFINID:ZDB-GENE-030131-9663 Length:637 Species:Danio rerio


Alignment Length:647 Identity:388/647 - (59%)
Similarity:467/647 - (72%) Gaps:49/647 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNF 65
            |||||||||..|:.|:.|::|||.||||||||||||:||||||||||||||||||||||||||||
Zfish    11 MASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF 75

  Fly    66 DLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSK 130
            |:|:.|||||||||||||||:||||||||||||::|||||:|||||||||||||||..||.| ||
Zfish    76 DVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SK 139

  Fly   131 GYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFD 195
            ||.||||||::||:.:|:|:||||||.:||:||:|..|||||.|:|.|||.|||||:|||.:|.|
Zfish   140 GYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMD 204

  Fly   196 DEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQ 260
            |::|||.|:.|||..|.|||:...|||:|||||::|..|.|..||:.:||.:: .||:::|.|||
Zfish   205 DQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTEL-NGKTVFVGRAQ 268

  Fly   261 KKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR 325
            ||.|||.|||||||:|||:|.....|||||:|||||||||::||..|||:|:|||||||. ||||
Zfish   269 KKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EEGR 332

  Fly   326 SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQ 390
            |||||||||::..|||.||||:|||:|||||||||||||||||||||.:|||:.:.|||......
Zfish   333 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANA 397

  Fly   391 I---YQPNAASGFFVPTLPSNQR---FFGSQVATQMRNTPRWVPQVRPPAAIQGVQAGAAAAGGF 449
            |   :||  |.|:|:|.:|..|.   ::.....||||..|||            .|.|....|||
Zfish   398 IINQFQP--AGGYFMPAVPQAQNRTTYYAPNQLTQMRPNPRW------------QQQGGRGQGGF 448

  Fly   450 QGTAGAVPTQFRSAAAGARGAQPQVQGTHAAAAAANNMRNTGARAI-TGQQTAAPNMQIPGAQIA 513
            ||    :|:..|...       |:....|.|.    |..|.|.|.: ||.|......|..|.:.|
Zfish   449 QG----MPSSLRQPG-------PRANIRHLAP----NASNQGPRGMPTGAQRVGGTGQPMGPRPA 498

  Fly   514 GG--AQQRTSNYKYTSNMRN--PPVPQ---LHQTQPIPQQLQGKNSEKLIASLLANAKPQEQKQI 571
            .|  ..:....|||.|.:||  |.|.|   |.|.|| ...:||:  |.|.||:||.|.||||||:
Zfish   499 MGMTTPRAMPPYKYASTIRNTQPQVVQPIALQQAQP-AVHVQGQ--EPLTASMLAAAPPQEQKQM 560

  Fly   572 LGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQVHRVTEPA 633
            |||||:|:|:.||.:||||||||||||:|||||||:|..|:|::||||||||||.|:..:.|
Zfish   561 LGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVAVLQAHQAKKDA 622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pAbpNP_476667.1 PABP-1234 2..625 CDD:130689 383/636 (60%)
pabpc4NP_958453.1 PABP-1234 12..614 CDD:130689 383/636 (60%)
RRM1_I_PABPs 13..92 CDD:240824 65/78 (83%)
RRM2_I_PABPs 98..173 CDD:240825 57/75 (76%)
RRM3_I_PABPs 191..270 CDD:240826 43/79 (54%)
RRM4_I_PABPs 294..371 CDD:240827 61/77 (79%)
PABP 546..613 CDD:279051 49/66 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 122 1.000 Domainoid score I5579
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37855
Inparanoid 1 1.050 696 1.000 Inparanoid score I658
OMA 1 1.010 - - QHG53624
OrthoDB 1 1.010 - - D1027234at2759
OrthoFinder 1 1.000 - - FOG0000294
OrthoInspector 1 1.000 - - otm25179
orthoMCL 1 0.900 - - OOG6_100425
Panther 1 1.100 - - O PTHR24012
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X269
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1312.980

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