Protein Alignment pAbp and ssx

DIOPT Version :9

• Sequence 1: NP_476667.1
• Gene: pAbp / 37070
• FlyBaseID: FBgn0265297
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Alignment Length: 267
• Identity: 77/267 - (28%)
• Similarity: 119/267 - (44%)
• Gaps: 53/267 - (19%)

  Fly   127 GNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL-------FTN 184
            |.:.|.|..|...||..::..::.|                    :...|::.::       .||
  Fly    50 GGNGGDGQEHSGDEEQHHSQDNEGN--------------------DNSAGQQQQMQQVDRTSATN 94

  Fly   185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSK-EDGKSKGFGFVAFETTEAAEAAVQALNGKDM 248
            :.:....:|..|.:|...|...|.|.:.|:|.. :.|.|.|:|||.::|...:|.|:|.|||
  Fly    95 LIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNG--- 156

  Fly   249 GEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNI 313
                 .||        |.:.||..:   .:...:|:...||||.||...|:||.|...|||||.|
  Fly   157 -----FYV--------RNKRLKVSY---ARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLI 205

  Fly   314 TSAKVMTDE-EGRSKGFGFVCFNAASEATCAVTELNGRVV--GSKPLYVALAQRKEERKAHLASQ 375
            ....::.|: .||.:|..||.:|...||..|:..||..|.  ||:|::|.||:...:.|   |:|
  Fly   206 VQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAK---AAQ 267

  Fly   376 YMRHMTG 382
            :|..:.|
  Fly   268 FMAQIGG 274

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pAbp	NP_476667.1	PABP-1234	2..625	CDD:130689	77/267 (29%)
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	28/98 (29%)
		RRM_SF	179..257	CDD:302621	33/77 (43%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439601
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR24012
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	3	2.940