DRSC/TRiP Functional Genomics Resources

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Protein Alignment pAbp and Pabpc4

DIOPT Version :9

Sequence 1:NP_476667.1 Gene:pAbp / 37070 FlyBaseID:FBgn0265297 Length:634 Species:Drosophila melanogaster
Sequence 2:XP_006238860.1 Gene:Pabpc4 / 298510 RGDID:1305015 Length:660 Species:Rattus norvegicus


Alignment Length:658 Identity:393/658 - (59%)
Similarity:472/658 - (71%) Gaps:44/658 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNF 65
            |||||||||..||.|:.|::|||.||||||||||||:||||||||||||||||||||||||||||
  Rat    10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF 74

  Fly    66 DLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSK 130
            |:::.|||||||||||||||:||||||||||||::|||||:|||||||||||||||..||.| ||
  Rat    75 DVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SK 138

  Fly   131 GYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFD 195
            ||.||||||:||||.:|:|:||||||.:||:||:|..|||||.|||.|||.|||||:|||.|:.|
  Rat   139 GYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203

  Fly   196 DEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQ 260
            ||.|:|.|..:||..|.|||....|||||||||::|..|.|..||:.:|||:| .|||::|.|||
  Rat   204 DENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEM-SGKSIFVGRAQ 267

  Fly   261 KKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR 325
            ||.|||.|||||||:|||:|.....|||||:|||||||||::||..|||:|:|||||||. |:||
  Rat   268 KKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGR 331

  Fly   326 SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQ 390
            |||||||||::..|||.||||:|||:|||||||||||||||||||||.:|||:.:.|||......
  Rat   332 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANA 396

  Fly   391 I---YQPNAASGFFVPTLPSNQ---RFFGSQVATQMRNTPRWVPQVRPPAAIQGVQAGAAAAGGF 449
            |   :|| ||.|:|||.:|..|   .::......|||..||| .|...|...||:.:....:|..
  Rat   397 ILNQFQP-AAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRW-QQGGRPQGFQGMPSALRQSGPR 459

  Fly   450 QGTAGAVPTQFRSAAAGARGAQPQVQ--GTHAAAAAANNMRNTGA--RAIT------GQQTAAPN 504
            .......||   ..|..:||.....|  |:......|.:....||  :.:|      |..||.||
  Rat   460 PALRHLAPT---GNAPASRGLPTTAQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVPN 521

  Fly   505 MQIPGAQIAGGAQQRTSNYKYTSNMRNP---------PVPQLHQTQPIPQQLQGKNSEKLIASLL 560
            : .|.|.:|..|.:..:.|||.||:|:|         |.|.:|        :||:  |.|.||:|
  Rat   522 L-APRATVAAAAPRAVAPYKYASNVRSPHPAIQPLQAPQPAVH--------VQGQ--EPLTASML 575

  Fly   561 ANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625
            |.|.||||||:|||||:|:|:.||:|||||||||||||:|||||||:|..|:|::||:|||||||
  Rat   576 AAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 640

  Fly   626 VHRVTEPA 633
            .|...:.|
  Rat   641 AHHAKKEA 648

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pAbpNP_476667.1 PABP-1234 2..625 CDD:130689 388/647 (60%)
Pabpc4XP_006238860.1 PABP-1234 11..640 CDD:130689 388/647 (60%)
RRM1_I_PABPs 12..91 CDD:240824 65/78 (83%)
RRM2_I_PABPs 97..172 CDD:240825 59/75 (79%)
RRM3_I_PABPs 190..269 CDD:240826 46/79 (58%)
RRM4_I_PABPs 293..370 CDD:240827 60/77 (78%)
PABP 572..639 CDD:279051 49/66 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 122 1.000 Domainoid score I5502
eggNOG 1 0.900 - - E1_KOG0123
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37855
Inparanoid 1 1.050 708 1.000 Inparanoid score I621
OMA 1 1.010 - - QHG53624
OrthoDB 1 1.010 - - D1027234at2759
OrthoFinder 1 1.000 - - FOG0000294
OrthoInspector 1 1.000 - - otm46281
orthoMCL 1 0.900 - - OOG6_100425
Panther 1 1.100 - - O PTHR24012
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X269
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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