Sequence 1: | NP_476667.1 | Gene: | pAbp / 37070 | FlyBaseID: | FBgn0265297 | Length: | 634 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006238860.1 | Gene: | Pabpc4 / 298510 | RGDID: | 1305015 | Length: | 660 | Species: | Rattus norvegicus |
Alignment Length: | 658 | Identity: | 393/658 - (59%) |
---|---|---|---|
Similarity: | 472/658 - (71%) | Gaps: | 44/658 - (6%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNF 65
Fly 66 DLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSK 130
Fly 131 GYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFD 195
Fly 196 DEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQ 260
Fly 261 KKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR 325
Fly 326 SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQ 390
Fly 391 I---YQPNAASGFFVPTLPSNQ---RFFGSQVATQMRNTPRWVPQVRPPAAIQGVQAGAAAAGGF 449
Fly 450 QGTAGAVPTQFRSAAAGARGAQPQVQ--GTHAAAAAANNMRNTGA--RAIT------GQQTAAPN 504
Fly 505 MQIPGAQIAGGAQQRTSNYKYTSNMRNP---------PVPQLHQTQPIPQQLQGKNSEKLIASLL 560
Fly 561 ANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625
Fly 626 VHRVTEPA 633 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
pAbp | NP_476667.1 | PABP-1234 | 2..625 | CDD:130689 | 388/647 (60%) |
Pabpc4 | XP_006238860.1 | PABP-1234 | 11..640 | CDD:130689 | 388/647 (60%) |
RRM1_I_PABPs | 12..91 | CDD:240824 | 65/78 (83%) | ||
RRM2_I_PABPs | 97..172 | CDD:240825 | 59/75 (79%) | ||
RRM3_I_PABPs | 190..269 | CDD:240826 | 46/79 (58%) | ||
RRM4_I_PABPs | 293..370 | CDD:240827 | 60/77 (78%) | ||
PABP | 572..639 | CDD:279051 | 49/66 (74%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 122 | 1.000 | Domainoid score | I5502 |
eggNOG | 1 | 0.900 | - | - | E1_KOG0123 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H37855 | |
Inparanoid | 1 | 1.050 | 708 | 1.000 | Inparanoid score | I621 |
OMA | 1 | 1.010 | - | - | QHG53624 | |
OrthoDB | 1 | 1.010 | - | - | D1027234at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000294 | |
OrthoInspector | 1 | 1.000 | - | - | otm46281 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100425 | |
Panther | 1 | 1.100 | - | - | O | PTHR24012 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X269 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
15 | 14.840 |