Protein Alignment pAbp and Pabpc1l

DIOPT Version :10

• Sequence 1: NP_476667.1
• Gene: pAbp / 37070
• FlyBaseID: FBgn0265297
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: XP_063141283.1
• Gene: Pabpc1l / 296351
• RGDID: 1563142
• Length: 655
• Species: Rattus norvegicus
• Alignment Length: 686
• Identity: 325/686 - (47%)
• Similarity: 422/686 - (61%)
• Gaps: 96/686 - (13%)

  Fly     1 MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNF 65
            ::|||||||..||.|:.|::.||..|.:|||||||||.|||||||||:|||||||||||||||||
  Rat    10 LSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNF 74

  Fly    66 DLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSK 130
            ::::.:|||||||.|||.|||||:||:|||||:.:|||||:|||||.||:|||.||..:|.| |:
  Rat    75 EMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SR 138

  Fly   131 GYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFD 195
            |:|||||||.|||..:|:.:||||||.:||:||.|..|::||.|||.:|..|||:||||...|.|
  Rat   139 GFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMD 203

  Fly   196 DEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQ 260
            ::.|::.|..:||..|.|||...:|:|:||||:.||..|.|:.||..:|||:: .|:.|||.|||
  Rat   204 EQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEV-SGQLLYVGRAQ 267

  Fly   261 KKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR 325
            |:||||.||||:||::||:|.....|||||||||||:|:||||:..||.||.|||||||| |...
  Rat   268 KRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMT-ESSH 331

  Fly   326 SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM---------- 380
            |||||||||::..|||.||||:|||:||:||||||||||||||||.|.:||.|.:
  Rat   332 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRSVLSSFQQ 396

  Fly   381 ------------TG---MRMQQ------------LGQIYQPNAAS---GFFVPT--LPSNQ-RFF 412
                        ||   :|:::            |.::.|...||   ....||  |.:.| .::
  Rat   397 PTSYLLPAVHQVTGCLQLRLREQNVTDRGSVEMTLDKLLQSLKASFDLSLEGPTCFLSTTQTMYY 461

  Fly   413 GSQVATQMRNTPRWVPQVRPPAAIQGVQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQPQVQGT 477
            .|.....|:..|||..|...|::                          :....|...||.....
  Rat   462 SSASIAPMQPDPRWTAQPHGPSS--------------------------TCPPAASVVQPLSTAP 500

  Fly   478 H------AAAAAANNMRNTGARAITGQQTAAPNMQ---IPGAQIAGGAQQRTSNYKYTSNMRNPP 533
            |      :|:.|::.:.:|......|.||..|..:   |||..:             .::..:..
  Rat   501 HPCIHLSSASQASSQVPHTQRVVNIGTQTTGPGGEGSCIPGQPL-------------LAHRGSSA 552

  Fly   534 VPQLHQTQPIPQQLQGKNSEKLIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEI 598
            |...|..|.....:.|  .:.|..|:|..|...||||::|||||.:|....|.|.|||||||||:
  Rat   553 VHSAHGVQESTVYVPG--HQPLTVSMLDAAPLHEQKQMIGERLYSLIHDACAPLTGKITGMLLEM 615

  Fly   599 ENSELLHMIEDQEALKAKVEEAVAVLQVHRVTEPAN 634
            :|.|||.::|..|:|.||:|||||||:.||..|.|:
  Rat   616 DNLELLLLLESPESLHAKIEEAVAVLKAHRAMESAD 651

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pAbp	NP_476667.1	PABP-1234	2..625	CDD:130689	320/674 (47%)
Pabpc1l	XP_063141283.1	None