Protein Alignment pAbp and Elavl3

DIOPT Version :10

• Sequence 1: NP_476667.1
• Gene: pAbp / 37070
• FlyBaseID: FBgn0265297
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_758827.1
• Gene: Elavl3 / 282824
• RGDID: 628892
• Length: 367
• Species: Rattus norvegicus
• Alignment Length: 379
• Identity: 95/379 - (25%)
• Similarity: 167/379 - (44%)
• Gaps: 65/379 - (17%)

  Fly     3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDL 67
            :|.|..|||::.:......|.|.|.:.|.::.||.||.:||||.:||:..|.||::|::|:|...
  Rat    40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLK 104

  Fly    68 VRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE-KGNSKG 131
            ::.|.|::.:::  ||.......|:::..|.:.:..|.:...||.:|.|::.::..|: .|.|:|
  Rat   105 LQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRG 167

  Fly   132 YGFVHFETEEAANTSIDKVNGML-LNGKKVYVGKFIPRKEREKELGEKAKLFTNVY--------- 186
            .||:.|:....|..:|..:||.. |...:....||  .....::.|:  .|.|::|
  Rat   168 VGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF--ANNPSQKTGQ--ALLTHLYQSSARRYAG 228

  Fly   187 -VKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGE 250
             :.:.|:.|..:.|...  .||..:...::::                 .:..|:..::|. .|.
  Rat   229 PLHHQTQRFRLDNLLNM--AYGVKSPLSLIAR-----------------FSPIAIDGMSGL-AGV 273

  Fly   251 GKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITS 315
            |.|...|.|                          |..::|.||....|:..|...|.|:|.:|:
  Rat   274 GLSGGAAGA--------------------------GWCIFVYNLSPEADESVLWQLFGPFGAVTN 312

  Fly   316 AKVMTD-EEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEER 368
            .||:.| ...:.||||||......||..|:..|||..:|.:.|.|:....|:.:
  Rat   313 VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHK 366

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pAbp	NP_476667.1	PABP-1234	2..625	CDD:130689	95/379 (25%)
Elavl3	NP_758827.1	ELAV_HUD_SF	36..366	CDD:273741	95/377 (25%)