Protein Alignment pAbp and pabp

DIOPT Version :10

• Sequence 1: NP_476667.1
• Gene: pAbp / 37070
• FlyBaseID: FBgn0265297
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_593377.1
• Gene: pabp / 2541505
• PomBaseID: SPAC57A7.04C
• Length: 653
• Species: Schizosaccharomyces pombe
• Alignment Length: 660
• Identity: 289/660 - (43%)
• Similarity: 376/660 - (56%)
• Gaps: 119/660 - (18%)

  Fly     2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFD 66
            ||||||:|...|.|:.||:.|:|.|||.|||||||.:||||||||||||....|.|:|||.:|:.
pombe    80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYT 144

  Fly    67 LVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKG 131
            |::.:|.||||||||||||:.|.|||||||||.||||||::|||||||.|||||||.||.||:||
pombe   145 LIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKG 209

  Fly   132 YGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDD 196
            ||||||::.|:||.:|:.|||||||.||||||..:.|:||:.::......|||||:||...:..:
pombe   210 YGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITE 274

  Fly   197 EKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQK 261
            ::..:.|..:|:|||..::..::.|.:|||||.:...|.|:.||..||.|:. :||.|||.||||
pombe   275 QEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEY-KGKKLYVGRAQK 338

  Fly   262 KAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRS 326
            |.||::||::::|::|.::.....||||::|||.|.:||:||:..||.:|.|||||:||||:|:|
pombe   339 KHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKS 403

  Fly   327 KGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQI 391
            |||||||:....||..||||:|.|::..||||||||||||.|::.|.:|
pombe   404 KGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQ---------------- 452

  Fly   392 YQPNAASGFFVPTLPSNQRFFGSQVATQMRNTPRWVPQVRPPAAIQGVQAGAA-----AAGGFQG 451
                                      .|.||..|...||...|.|..||.||.     ..||:
pombe   453 --------------------------IQARNQFRLQQQVAAAAGIPAVQYGATGPLIYGPGGY-- 489

  Fly   452 TAGAVPTQFRSAAAGARGAQPQVQGTHAAAAAANNMRNTGARAITGQQTAAPNM--QIPGAQIAG 514
               .:|     ||...|| .|.|.|.:                  |.....|.|  |.|    ||
pombe   490 ---PIP-----AAVNGRG-MPMVPGHN------------------GPMPMYPGMPTQFP----AG 523

  Fly   515 GAQQRTSNYKYTSNMRNPPVPQLHQTQPIPQQ-----LQGK-----------------NSEKLIA 557
            |..              |..|.::...|:|.|     :.|.                 ..|:..|
pombe   524 GPA--------------PGYPGMNARGPVPAQGRPMMMPGSVPSAGPAEAEAVPAVPGMPERFTA 574

  Fly   558 SLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVA 622
            :.||....:.:||:|||.|||.:......|:|||||||||:.|||||.::||..||..:|.||:.
pombe   575 ADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIG 639

  Fly   623 VLQVHRVTEP 632
            |||.....||
pombe   640 VLQEFVDQEP 649

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pAbp	NP_476667.1	PABP-1234	2..625	CDD:130689	285/651 (44%)
pabp	NP_593377.1	Epiglycanin_TR	20..79	CDD:461702
		PABP-1234	80..642	CDD:130689	285/651 (44%)