DRSC/TRiP Functional Genomics Resources

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Protein Alignment pAbp and Ncl

DIOPT Version :10

Sequence 1:NP_476667.1 Gene:pAbp / 37070 FlyBaseID:FBgn0265297 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_036881.2 Gene:Ncl / 25135 RGDID:3153 Length:714 Species:Rattus norvegicus


Alignment Length:373 Identity:99/373 - (26%)
Similarity:172/373 - (46%) Gaps:62/373 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SLYVGDLPQD-------VNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERAL 60
            :|::|:|..:       |..|.||.|...|..        ||.|..:..:.||:|:...|.|:||
  Rat   313 NLFIGNLNPNKSVAELKVAISELFAKNDLAAV--------DVRTGTNRKFGYVDFESAEDLEKAL 369

  Fly    61 DTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE 125
            :.....:..|: |::...:...|.:......:..|||...|....:.:.|.   :.:..::.:.:
  Rat   370 ELTGLKVFGNE-IKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE---DAVEIRLVSQD 430

  Fly   126 KGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV---YVGKFIPRKEREKE----LGEKAKLFT 183
             |.|||..::.|::|..|..::::..|..::|:.|   |.|:...|:||..:    .||...|  
  Rat   431 -GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTL-- 492

  Fly   184 NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDM 248
              .:.|.:....:|.|:|.||   |.|..||.....|||||:.|:.|.:.|.|:.|:.:.|..::
  Rat   493 --VLSNLSYSATEETLQEVFE---KATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEI 552

  Fly   249 GEGKSLYV----ARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSP 309
             ||:::.:    .|....| |.|..|                 .|:||.|.:...::.|:.:|. 
  Rat   553 -EGRTIRLELQGPRGSPNA-RSQPSK-----------------TLFVKGLSEDTTEETLKESFE- 597

  Fly   310 YGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTEL-NGRVVGSK 355
             |:: .|:::||.| |.|||||||.||:..:|..|...: :|.:.|:|
  Rat   598 -GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pAbpNP_476667.1 PABP-1234 2..625 CDD:130689 99/373 (27%)
NclNP_036881.2 8 X 8 AA tandem repeats of X-T-P-X-K-K-X-X 58..135
RRM1_NCL 312..386 CDD:409837 21/81 (26%)
RRM2_NCL 395..470 CDD:409838 16/78 (21%)
RRM3_NCL 489..561 CDD:409839 24/79 (30%)
RRM4_NCL 576..653 CDD:409840 27/88 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 646..714
Blue background indicates that the domain is not in the aligned region.

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