DRSC/TRiP Functional Genomics Resources

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Protein Alignment pAbp and Ncl

DIOPT Version :10

Sequence 1:NP_476667.1 Gene:pAbp / 37070 FlyBaseID:FBgn0265297 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_035010.3 Gene:Ncl / 17975 MGIID:97286 Length:707 Species:Mus musculus


Alignment Length:365 Identity:97/365 - (26%)
Similarity:172/365 - (47%) Gaps:50/365 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SLYVGDL--PQDVNE-----SGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERAL 60
            :|::|:|  .:.|||     |.||.|...|  |:.:|..    |.|..|  ||:|:...|.|:||
Mouse   310 NLFIGNLNPNKSVNELKFAISELFAKNDLA--VVDVRTG----TNRKFG--YVDFESAEDLEKAL 366

  Fly    61 DTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE 125
            :.....:..|: |::...:...|.:......:..|||...|....:.:.|.   :.:..::.:.:
Mouse   367 ELTGLKVFGNE-IKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE---DAMEIRLVSQD 427

  Fly   126 KGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV---YVGKFIPRKEREKELGEKAKLFTNVYV 187
             |.|||..::.|::|..|..::::..|..::|:.|   |.|:...|:||..:....:.....:.:
Mouse   428 -GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVL 491

  Fly   188 KNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGK 252
            .|.:.....|.|:|.||   |.|..||.....||.||:.|:.|.:.|.|:.|:.:.|..:: ||:
Mouse   492 SNLSYSATKETLEEVFE---KATFIKVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEI-EGR 552

  Fly   253 SLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAK 317
            ::.:                  ||:.....|.....|:||.|.:...::.|:.:|.  |:: .|:
Mouse   553 TIRL------------------ELQGSNSRSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RAR 596

  Fly   318 VMTDEE-GRSKGFGFVCFNAASEATCAVTEL-NGRVVGSK 355
            ::||.| |.|||||||.||:..:|..|...: :|.:.|:|
Mouse   597 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pAbpNP_476667.1 PABP-1234 2..625 CDD:130689 97/365 (27%)
NclNP_035010.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..308
PRK13808 <12..142 CDD:172341
8 X 8 AA tandem repeats of X-T-P-X-K-K-X-X 58..135
RRM1_NCL 309..383 CDD:409837 25/81 (31%)
RRM2_NCL 392..467 CDD:409838 16/78 (21%)
RRM3_NCL 486..558 CDD:409839 22/93 (24%)
RRM4_NCL 569..646 CDD:409840 26/71 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 639..707
Blue background indicates that the domain is not in the aligned region.

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