DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pcl and INTS12

DIOPT Version :9

Sequence 1:NP_001261067.1 Gene:Pcl / 37069 FlyBaseID:FBgn0003044 Length:1043 Species:Drosophila melanogaster
Sequence 2:NP_001135943.1 Gene:INTS12 / 57117 HGNCID:25067 Length:462 Species:Homo sapiens


Alignment Length:253 Identity:63/253 - (24%)
Similarity:89/253 - (35%) Gaps:96/253 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 QQPSP----IIPAI-------------QHKAILPL----IDSSTADSSSCSSSSVSSSSYSG--- 257
            |:|:|    :.||:             |....|..    :.:||..|.:.||:|||||..||   
Human   228 QKPAPAVVSVTPAVKDPLVKKPETKLKQETTFLAFKRTEVKTSTVISGNSSSASVSSSVTSGLTG 292

  Fly   258 ----TATTSAAVVIVDEPDSTTTTPQTPPTTPEAMSSP-GKSSPSPPLLATQSLLKGVNSMKPSF 317
                .|.||:|.....:..|||......|.|..|...| |.:.     |||.|  ||....|   
Human   293 WAAFAAKTSSAGPSTAKLSSTTQNNTGKPATSSANQKPVGLTG-----LATSS--KGGIGSK--- 347

  Fly   318 KTVEAAPPTPPTPPSPPPPP---------------PAPPVAAPSPAVTYALQEDVFIKCNDGRFY 367
              :.:...|.||.|..||||               ....|..|||:                   
Human   348 --IGSNNSTTPTVPLKPPPPLTLGKTGLSRSVSCDNVSKVGLPSPS------------------- 391

  Fly   368 LGTIIDQTSDQYLIRFDDQSEQWCEPDKLRKLGGGSSITAGGGGASTTESTNTSPSGP 425
              :::..:|.|.                   .|.|:|.|:|..|::|:::|:.|.|.|
Human   392 --SLVPGSSSQL-------------------SGNGNSGTSGPSGSTTSKTTSESSSSP 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PclNP_001261067.1 TUDOR 350..399 CDD:197660 2/48 (4%)
PHD_SF 426..469 CDD:304600 63/253 (25%)
PHD2_MTF2_PHF19_like 514..565 CDD:276978
Mtf2_C 985..1032 CDD:290768
INTS12NP_001135943.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 42..132
PHD_Int12 161..212 CDD:276976
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 301..462 42/180 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4323
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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