DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pcl and IntS12

DIOPT Version :10

Sequence 1:NP_476672.1 Gene:Pcl / 37069 FlyBaseID:FBgn0003044 Length:1043 Species:Drosophila melanogaster
Sequence 2:NP_651507.1 Gene:IntS12 / 43227 FlyBaseID:FBgn0039459 Length:328 Species:Drosophila melanogaster


Alignment Length:366 Identity:69/366 - (18%)
Similarity:119/366 - (32%) Gaps:115/366 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 ATTGPQ--TTHPTHPSTIQITNSFA-QQSTPPKQQAATSCSPFKANNIRIISTAPSVYSLNKPPQ 134
            |..||:  .|:...|..::...:|: :.:|||:|       |..|:.|..::.:|     :|.|.
  Fly    47 ARFGPEKSLTNNMTPRMLEDEANFSGRAATPPQQ-------PINADEIINLTNSP-----DKEPS 99

  Fly   135 EAHSTYAPVQSYYLPSGGGQTAGQINLLAASGTGKQLQPPPLVPVTNSTSPPSTVVLDRINICIN 199
            ::..|.|       .|..|.:|  :.::....||.                     ...:|.|:.
  Fly   100 DSVDTIA-------DSDDGLSA--VGIVNTGDTGD---------------------FGDLNCCVC 134

  Fly   200 NHYTETPTSLSSSLTTAQQPSPIIPAIQHKAILPLIDSSTAD--------SSSCSSSSVSSSSYS 256
            .....|.|   :.|....:...:.....||.  |:.....||        .:.|:..:.|..:.|
  Fly   135 GEMVFTAT---NRLIECSKCGAMYHQECHKP--PITKEEAADDQEQNWQCDTCCNKPTSSGRTTS 194

  Fly   257 GTATTSAAVVIVDEPDSTTTTPQTPPTTPEAMSSPGKSSPSPPLLATQSLLKGVNSMKPSFKTVE 321
            ..|..:..|.|.|||         .|.|.:|.||...|..|          ...||..|.::   
  Fly   195 SAAAVTPTVFIADEP---------MPLTSKAKSSVASSRSS----------NSSNSSSPFYR--- 237

  Fly   322 AAPPTPPTPPSPPPPPPAPPVAAPSPAVTYALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQ 386
                         |.|.:...|:.|.:..:..:                  ..:|.......:::
  Fly   238 -------------PEPSSSTNASSSSSSKHGHK------------------SSSSSSSKSHKEER 271

  Fly   387 SEQWCEPDKLRKLGG----GSSITAGGGGASTTESTNTSPS 423
            |.:......|..:||    .||.|:.....|:|:|::.|.|
  Fly   272 SSKSTAASSLSAIGGMEKHNSSGTSSRRSGSSTKSSSKSSS 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PclNP_476672.1 PRK12323 <13..107 CDD:481241 10/36 (28%)
Tudor_dPCL-like 350..401 CDD:410523 3/50 (6%)
PHD_SF 426..469 CDD:473978
PHD2_MTF2_PHF19_like 514..565 CDD:276978
Mtf2_C 985..1033 CDD:464077
IntS12NP_651507.1 PHD_Int12 130..182 CDD:276976 10/56 (18%)
Blue background indicates that the domain is not in the aligned region.

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