DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pcl and ints12

DIOPT Version :9

Sequence 1:NP_001261067.1 Gene:Pcl / 37069 FlyBaseID:FBgn0003044 Length:1043 Species:Drosophila melanogaster
Sequence 2:NP_001002161.2 Gene:ints12 / 415251 ZFINID:ZDB-GENE-040625-178 Length:479 Species:Danio rerio


Alignment Length:284 Identity:66/284 - (23%)
Similarity:84/284 - (29%) Gaps:106/284 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 KAILPLIDSSTADSSSCSSSSVSSSSYSGTATTSAAVVIVDEPDSTTTTPQTPPTTPEAMSSPGK 293
            |..||.:  :..||.|.||||||||                     .||           |:..|
Zfish    58 KVSLPKM--TKQDSKSSSSSSVSSS---------------------ITT-----------SNSSK 88

  Fly   294 SSPSPPLLATQSLLKGVNSMKPSFK-TVEAAPPTPPTPPSPPPPPPAPPVAAPSPAVTYALQEDV 357
            ||.|.            .|.|.|.| |:|.....|.....||..|......:.|..:.:      
Zfish    89 SSISE------------KSKKESEKRTLEKIRVDPGEGVEPPKKPRLEKQDSHSSPIAF------ 135

  Fly   358 FIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKLRKLGGGSSITAGGGGASTTESTNTSP 422
                            ||.|..:..|.|..|                         |........
Zfish   136 ----------------QTKDIPIPDFTDIDE-------------------------TNADDFAME 159

  Fly   423 SGPMCVACKRSDI---EDVVEICERCGRGYHRGCTVEIVTGSG------IWSCKRCAKPMK-MQQ 477
            .|..||.|::..:   ..:|| |:.|...||:.|....||...      :|.|.||.:.|| |.|
Zfish   160 MGLACVVCRQMTVTSGNQLVE-CQECHNLYHQECHKPQVTDKDVNDPRLVWYCARCTRQMKRMAQ 223

  Fly   478 PVSHKITKPA-GICRQLPYHADKL 500
            .......||| .:...:|...|.|
Zfish   224 KTQKPPQKPAPALATTVPLLKDPL 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PclNP_001261067.1 TUDOR 350..399 CDD:197660 6/48 (13%)
PHD_SF 426..469 CDD:304600 14/51 (27%)
PHD2_MTF2_PHF19_like 514..565 CDD:276978
Mtf2_C 985..1032 CDD:290768
ints12NP_001002161.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 57..140 34/149 (23%)
PHD_Int12 163..214 CDD:276976 14/51 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 221..241 5/19 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 274..293
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 305..479
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4323
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.