DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pcl and Ints12

DIOPT Version :9

Sequence 1:NP_001261067.1 Gene:Pcl / 37069 FlyBaseID:FBgn0003044 Length:1043 Species:Drosophila melanogaster
Sequence 2:XP_006233382.1 Gene:Ints12 / 295448 RGDID:1359136 Length:467 Species:Rattus norvegicus


Alignment Length:434 Identity:86/434 - (19%)
Similarity:129/434 - (29%) Gaps:187/434 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 ATTG------PQTTHP---THPSTIQITNSFAQQSTPPKQQAATSCSPFKANNIRIISTAPSVYS 128
            ||.|      |:...|   :.|.|:|.:...|.......::.:......:.....::....:|.|
  Rat   113 ATEGVDVPKKPRLEKPETRSSPITVQTSKDLAMADLSSFEETSADDFAMEMGLACVVCRQMTVAS 177

  Fly   129 LNK--PPQEAHSTYAPVQSYYLPSGGGQTAGQINLLAASGTGKQLQPPPLV------------PV 179
            .|:  ..||.|:.|.  |..:.|        |:       |.|::..|.||            ..
  Rat   178 GNQLVECQECHNLYH--QDCHKP--------QV-------TDKEVNDPRLVWYCARCTRQMKRMA 225

  Fly   180 TNSTSPPSTVVLDRINICINNHYTETPTSLSSSLTTAQQPSPIIPAIQHKAILPLIDS------- 237
            ..:..||                              |:|:|.:.::......||:..       
  Rat   226 QKTQKPP------------------------------QKPAPTVVSVAPTVKDPLVKKPETKLKQ 260

  Fly   238 --------------STADSSSCSSSSVSSSSYSG-------TATTSAAVVIVDEPDSTTTTPQTP 281
                          ||..|.:.||::||||..||       .|.||:|            .|.|.
  Rat   261 ETTFLAFKRTEVKPSTVISGNSSSNNVSSSVTSGLTGWAAFAAKTSSA------------GPSTA 313

  Fly   282 PTTPEAMSSPGK----SSPSPPL----LATQSLLKGVNSMKPSFKTVEAAPPTPPTPPSPPPPP- 337
            .....|.:|.||    |:...|:    |||.|  ||....|     :.::..|.|:.|..|.|| 
  Rat   314 KLNSTAQNSSGKPAASSASQKPVGLTGLATSS--KGGIGSK-----IGSSNSTSPSVPLKPLPPL 371

  Fly   338 --------------PAPPVAAPSPAVTYALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSE 388
                          ....|..|||:                     :::...|.|.         
  Rat   372 TLGKTGLSRSVSCDNVSKVGLPSPS---------------------SLVPGGSSQL--------- 406

  Fly   389 QWCEPDKLRKLGGGSSITAGGGG-------ASTTESTNTSPSGP 425
                      .|.|:|.|||..|       :.|:.||:.|..||
  Rat   407 ----------SGNGNSATAGPTGSITSKTTSETSSSTSASLKGP 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PclNP_001261067.1 TUDOR 350..399 CDD:197660 2/48 (4%)
PHD_SF 426..469 CDD:304600 86/434 (20%)
PHD2_MTF2_PHF19_like 514..565 CDD:276978
Mtf2_C 985..1032 CDD:290768
Ints12XP_006233382.1 PHD_Int12 166..217 CDD:276976 15/67 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4323
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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