DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pcl and Ints12

DIOPT Version :10

Sequence 1:NP_476672.1 Gene:Pcl / 37069 FlyBaseID:FBgn0003044 Length:1043 Species:Drosophila melanogaster
Sequence 2:XP_006233382.1 Gene:Ints12 / 295448 RGDID:1359136 Length:467 Species:Rattus norvegicus


Alignment Length:396 Identity:85/396 - (21%)
Similarity:127/396 - (32%) Gaps:130/396 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 PQTTHPTHPSTIQITNSFAQQSTPPKQQAATSCSPFKANNIRIISTAPSVYSLNK--PPQEAHST 139
            |:|.  :.|.|:|.:...|.......::.:......:.....::....:|.|.|:  ..||.|:.
  Rat   128 PETR--SSPITVQTSKDLAMADLSSFEETSADDFAMEMGLACVVCRQMTVASGNQLVECQECHNL 190

  Fly   140 YAPVQSYYLPSGGGQTAGQINLL--AASGT------GKQLQPPPLVPVTNSTSPPSTVVLDRINI 196
            |.  |..:.|....:......|:  .|..|      .::.|.||..|.....|...||       
  Rat   191 YH--QDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKTQKPPQKPAPTVVSVAPTV------- 246

  Fly   197 CINNHYTETPTSLSSSLTTAQQPSPIIPAIQHKAILPLIDSSTADSSSCSSSSVSSSSYSG---- 257
              .:...:.|.:.....||       ..|.:...:.|    ||..|.:.||::||||..||    
  Rat   247 --KDPLVKKPETKLKQETT-------FLAFKRTEVKP----STVISGNSSSNNVSSSVTSGLTGW 298

  Fly   258 ---TATTSAAVVIVDEPDSTTTTPQTPPTTPEAMSSPGK----SSPSPPL----LATQSLLKGVN 311
               .|.||:|            .|.|......|.:|.||    |:...|:    |||.|  ||..
  Rat   299 AAFAAKTSSA------------GPSTAKLNSTAQNSSGKPAASSASQKPVGLTGLATSS--KGGI 349

  Fly   312 SMKPSFKTVEAAPPTPPTPPSPPPPP---------------PAPPVAAPSPAVTYALQEDVFIKC 361
            ..|     :.::..|.|:.|..|.||               ....|..|||:             
  Rat   350 GSK-----IGSSNSTSPSVPLKPLPPLTLGKTGLSRSVSCDNVSKVGLPSPS------------- 396

  Fly   362 NDGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKLRKLGGGSSITAGGGG-------ASTTESTN 419
                    :::...|.|.                   .|.|:|.|||..|       :.|:.||:
  Rat   397 --------SLVPGGSSQL-------------------SGNGNSATAGPTGSITSKTTSETSSSTS 434

  Fly   420 TSPSGP 425
            .|..||
  Rat   435 ASLKGP 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PclNP_476672.1 PRK12323 <13..107 CDD:481241 6/29 (21%)
Tudor_dPCL-like 350..401 CDD:410523 2/50 (4%)
PHD_SF 426..469 CDD:473978 85/396 (21%)
PHD2_MTF2_PHF19_like 514..565 CDD:276978
Mtf2_C 985..1033 CDD:464077
Ints12XP_006233382.1 PHD_Int12 166..217 CDD:276976 11/52 (21%)
Blue background indicates that the domain is not in the aligned region.

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