DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pcl and phf1

DIOPT Version :9

Sequence 1:NP_001261067.1 Gene:Pcl / 37069 FlyBaseID:FBgn0003044 Length:1043 Species:Drosophila melanogaster
Sequence 2:NP_587831.1 Gene:phf1 / 2539406 PomBaseID:SPCC4G3.07c Length:461 Species:Schizosaccharomyces pombe


Alignment Length:568 Identity:111/568 - (19%)
Similarity:172/568 - (30%) Gaps:215/568 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   223 IPAIQHKAILPLIDSSTADSSSCSSSSVSSSSYSGTATTSAAVVIVDEPDSTTTTPQTPPTTPEA 287
            :|.:..:.::...|||..|:|..:|.       ||.:..........:......||....|.| |
pombe    31 LPQVSAQGVVRETDSSNFDASPVASG-------SGISDVGPFGADFHQLQQHVQTPYGGMTMP-A 87

  Fly   288 MSSPGKSSPSPPLLATQSLLKGVNSMKPSFKTVEAAPPTPPTPPSPPPPPPAPPVAAPSPAVTY- 351
            .||.|.:|                                           .||...||.:|:: 
pombe    88 SSSSGATS-------------------------------------------VPPEQDPSLSVSFN 109

  Fly   352 ALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKLRKLGGGSSITAGGGGASTTE 416
            .|.:....|..:||.....   :..|..:..:|....:..|.|...........|..|.......
pombe   110 RLPKSASTKTKNGRIRSSR---REDDNRIPFYDLDVAEGAEDDLQEDFHVEGMKTKSGRKIQRPV 171

  Fly   417 STNTSPSGPMCVACKRSDIE-DVVEICERCGRGYHRGCTVEIVTGSGIWSCKRCAKPMKMQQPVS 480
            :.|     |...|.||...: |:|.:|..|.||:                           .|:|
pombe   172 AYN-----PNATALKRKSRKVDMVTLCSVCQRGH---------------------------SPLS 204

  Fly   481 HKITKPAGICRQLPYHADKLSWDEKHRVNEEQIYCYCGKPGKFDHNMLQCCKCRNWFHTQCMQNF 545
            ::|....| |.. |||.                  .|..| ..|...:|.... .||..:|....
pombe   205 NRIVFCDG-CNS-PYHQ------------------LCHHP-PIDDATVQDVDA-EWFCMKCQYRR 247

  Fly   546 KKKLLRGDMFFVFCCTVCNNGI-EFVRRMQIEWVDVLHIA--------------LYNLRKHQHQK 595
            .|:.|...|      |..:.|: |..::|.:..:...|:|              :||.|..:   
pombe   248 AKQPLETGM------TAQDLGLSESDKKMYLSSLPTPHLADLILFCEKSYPSLPIYNPRTRE--- 303

  Fly   596 YHHLLNDIWPFILEQRHQLPICEKWRTLPETALMERL--KQ----------------------TL 636
               ||.:|       ||||.:..:.:   :.:|.|||  ||                      ||
pombe   304 ---LLGEI-------RHQLLVSSERQ---QISLQERLHAKQDEAPSDEPAPVPYTASYVANSGTL 355

  Fly   637 KDYSDRFVCGREFKRAPAF--YALRHSGPPHIPKVF--------LEP--HEELSD---------E 680
            .||             |..  .|:|::..|...::|        |.|  |:..|:         :
pombe   356 YDY-------------PTLIRLAIRNTLSPSKDEIFNWLAQNVPLLPTFHDSASEAIRWMVNKGQ 407

  Fly   681 LLEKR--FKLMLMPEEPDEGANELP-----KRVPKDV-YEFNTDEDDP 720
            |:...  :::..:.|.|....:.||     ::|||.| ..|.|  |||
pombe   408 LVRSGSIYQIATVEEYPHLQPSLLPTFQRNRKVPKLVPVSFPT--DDP 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PclNP_001261067.1 TUDOR 350..399 CDD:197660 8/49 (16%)
PHD_SF 426..469 CDD:304600 9/43 (21%)
PHD2_MTF2_PHF19_like 514..565 CDD:276978 11/50 (22%)
Mtf2_C 985..1032 CDD:290768
phf1NP_587831.1 PHD_Phf1p_Phf2p_like 192..243 CDD:276977 18/99 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4323
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001586
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12628
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6663
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.030

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