DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and sema3e

DIOPT Version :10

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:NP_001038549.1 Gene:sema3e / 565658 ZFINID:ZDB-GENE-030131-7864 Length:768 Species:Danio rerio


Alignment Length:625 Identity:175/625 - (28%)
Similarity:278/625 - (44%) Gaps:109/625 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 YQDLMSTAKRFYDPETTWYSE----------MLFDVARNQVIVGARDTLYRMSFDLE----PLER 105
            |..|..:.|..::...||..:          ||.|..:.::|:|.:|.||  |.:||    |.:|
Zfish    27 YPRLRLSHKELWELNRTWVFQAGEGRLQQYTMLLDETQERLIIGGKDVLY--SLNLERITAPHKR 89

  Fly   106 ASWGATPSEIAMCQAKGQSERWCRNYVRVLHSYGENQLYACGTNAFQPSCSWRQME--------- 161
            ..|.::..::..|..:|:.:..|.||::::..|....|.||||.||.|.|::.::.         
Zfish    90 IVWSSSQEQVEDCLMQGREKPECANYIKLVQHYNSTHLLACGTGAFSPVCAYIRVSRGAEQEREF 154

  Fly   162 NLTVTGVDSGVVKCPFHPQANSTSLLQSNGQLFVGTATDFSGSDVAILRTGVESNKRFLRTKQYN 226
            .|....::||..:.||||.:...|.:. .|:||||..||:..:|.|:.|.|   |..|:||:..:
Zfish   155 RLESDHIESGRGRVPFHPNSPLASTVY-RGELFVGLYTDYWENDAALYRLG---NHSFIRTEVGD 215

  Fly   227 NNWLSGAQFVGSF-------EAGHFVYFLLRESAAEHMSCGKVIYSRVARVCKNDVGGGGQLLRD 284
            ...|:..:||||.       .|...||:...|..|:.....|.:|:||||||.|| .||.::|.:
Zfish   216 RQQLNEPKFVGSAVIPDNDDPADDKVYYFFTERVADVEGGNKAVYTRVARVCAND-QGGQRMLVN 279

  Fly   285 NWTSFLKARLNCSL--PGEYPYYFDEIQGMTYA----ESESILYATFRTSGSSIFGSAVCAYNLS 343
            .|:||||.||.||:  |.....:|||::.:...    |....::..|.|:.:...|.|||.||:.
Zfish   280 RWSSFLKTRLICSVAGPNGIDTHFDELEDVFVLRKKDEKNPEIFGLFSTTSAVFKGYAVCMYNMD 344

  Fly   344 SINAAFDGPFKQQEHSDAAWKTVNTN---QRSQFQCGTSSIGHWLESSRYQ-----------LMD 394
            .|.|||:|||..:|.:|..||..:..   .|........:.||:..|..|.           ||.
Zfish   345 DIRAAFNGPFAHRERTDHHWKVYDGKVPYPRPGSCASKINGGHFSSSKEYSDEVLRFARSHPLMF 409

  Fly   395 EAVQPIGAEPLY-----HSKLEQFGRLALDIINTKTEQVHVLFVASSGNHIKKLSVKY--DGDGV 452
            :||||:...|:.     ..||.|   ||:|.:..:....:|||:.:..:.:.|:...|  :.|.|
Zfish   410 QAVQPVHRRPILLDTEGGRKLTQ---LAVDRVEAEDGHYNVLFIGTDNSVVLKMITIYNKEADTV 471

  Fly   453 QTCLVE---LWQADDTGTSSLLNMAYLKVSDSLYLGTDLALTRIPAQHCSRHVSQ-SSCLNSMDP 513
            :..|:|   :::.....|..|::..    ...||:|::|.:|:|....|..:.|. :.|..:.||
Zfish   472 EEVLLEELQVFKVPVPITEILISTK----RQQLYVGSELGVTQIRVHQCGLYGSACADCCLARDP 532

  Fly   514 YCGWNELV-ERCMP---------QPQDSSVLQHWHQAPQITCPVLNAPIDGGWSTWSPWAVCQQH 568
            ||.|:... .|..|         :.||   ::|.:...|  |..|....:...|....:.|    
Zfish   533 YCAWDGFTCSRYYPAGLYTKRRFRRQD---VRHGNAVQQ--CNGLQLSEEQSISEKLVYGV---- 588

  Fly   569 EQPDSNCQCRQRSCNNPQPQHGGATCEGISTQVTNCTQHG 608
            |...:..:||.||               :...||...:||
Zfish   589 ENNSTLLECRPRS---------------LQASVTWYIEHG 613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 145/490 (30%)
PSI 497..546 CDD:396154 14/59 (24%)
TSP1 556..607 CDD:214559 9/50 (18%)
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
sema3eNP_001038549.1 Sema_3E 46..516 CDD:200514 143/483 (30%)
PSI 515..563 CDD:214655 12/50 (24%)
Ig_Sema3 579..668 CDD:409455 11/54 (20%)
Ig strand A 579..585 CDD:409455 1/5 (20%)
Ig strand B 590..598 CDD:409455 0/7 (0%)
Ig strand C 604..610 CDD:409455 2/5 (40%)
Ig strand C' 612..615 CDD:409455 2/2 (100%)
Ig strand D 623..627 CDD:409455
Ig strand E 630..637 CDD:409455
Ig strand F 643..652 CDD:409455
Ig strand G 655..668 CDD:409455
Blue background indicates that the domain is not in the aligned region.

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