DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and sema4ga

DIOPT Version :9

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:XP_001921423.3 Gene:sema4ga / 563785 ZFINID:ZDB-GENE-060503-381 Length:863 Species:Danio rerio


Alignment Length:558 Identity:157/558 - (28%)
Similarity:269/558 - (48%) Gaps:78/558 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 MFSQLWLLLILSLLTLEGPQPSTGSGYTTKSSVDLLENDSRYISYQDLMSTAKRFYDPETTWYSE 75
            |..:.|||.:|.|..:     |:..||..|..:||.......:.::.|:. .:||.. .|..||.
Zfish     5 MNHRAWLLFLLLLYVV-----SSVWGYPFKPPLDLDVTPRTTVLFKGLLG-CRRFRG-LTLNYSL 62

  Fly    76 MLFDVARNQVIVGARDTLYRM-SFDLEP--LERASWGATPSEIAMCQAKGQ-SERWCRNYVRVLH 136
            :|.:...:.:.||||..|:.: :.|:..  .:...|.|:..::..|..||: ::..|.|::|.|.
Zfish    63 LLLEEDADLLYVGARGALFALQASDVSSSLAQTIDWEASDDQMQQCWNKGKDNQTECFNHIRFLQ 127

  Fly   137 SYGENQLYACGTNAFQPSCSWRQMENLTVTGV-DSGVVKCPFHPQANSTSLLQSNGQLFVGTATD 200
            .:....||.|||:||.|.|::.......::.| :.|..|||:.|....|.|| .:.|::..:..:
Zfish   128 RFNSTHLYTCGTHAFSPLCAYIDGREFKISSVFEEGREKCPYDPSKGYTGLL-IDQQMYTASQYE 191

  Fly   201 F-SGSDVAILRTGVESNKRFLRTKQYNNNWLSGAQFVG--------SFEAG--HFVYFLLRESAA 254
            | |..|:.     ..|....|:|::....||..|.|||        |..||  ..:||...|.:.
Zfish   192 FRSFPDIR-----RNSPNPILKTEEAPTQWLQEADFVGSALVRESLSSSAGDDDKIYFFFTEKSQ 251

  Fly   255 E---HMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPGEYPYYFDEIQGMTYAE 316
            |   :.|..:|  :|||||||.| .||...|:..|||||||||.|||| :|.::|:.::.:.:.|
Zfish   252 ELSPYFSHSRV--ARVARVCKRD-RGGLLTLQKKWTSFLKARLVCSLP-DYEFHFNVLRSVFFLE 312

  Fly   317 ----SESILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPF-KQQEHSDAAWKTVNTNQRSQFQC 376
                .:|..|..|.....::..||:|.|::|.|..|||||: :.:|.|::.| |..|.:..:.:.
Zfish   313 GSSSQDSAFYGIFGLEWKNVKASAICQYSVSDIQWAFDGPYMESKEDSNSKW-TQYTGKVPEPRP 376

  Fly   377 GT------------SSIG------HWLESSRYQLMDEAVQPIGAEPLYHSKLEQFGRLALDIINT 423
            |:            |||.      |::.  |:.||...:.|.|..||...:...:.::|:..:..
Zfish   377 GSCITDQHRAKGINSSINLPDDVLHFVR--RHPLMYRQILPQGQRPLLFRRNVDYTKIAVHTVTG 439

  Fly   424 KTEQV-HVLFVASSGNHIKKLSVKYDGDGVQTCL-----VELWQADDTGTSSLLNMAYLKVSDSL 482
            ...|: |:||:.:....::: :||     |:..|     ::|::......|.:::    |...|:
Zfish   440 LDGQIYHILFIGTDEGWLQR-AVK-----VEDHLHIIEELQLFEEPQPVDSIVIS----KKQMSV 494

  Fly   483 YLGTDLALTRIPAQHCSRHVSQSSCLNSMDPYCGWNEL 520
            |:|:..::.::|...|:|:.|...|:.:.||:|.|:.|
Zfish   495 YVGSPTSVVQLPLSTCTRYSSCFDCVMARDPFCAWDGL 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 134/478 (28%)
PSI 497..546 CDD:279745 9/24 (38%)
TSP1 556..607 CDD:214559
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
sema4gaXP_001921423.3 Sema_4G 51..508 CDD:200523 135/480 (28%)
PSI 510..549 CDD:214655 9/23 (39%)
Ig 568..650 CDD:299845
IG_like 569..638 CDD:214653
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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