DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema5c and si:dkey-49n23.1

DIOPT Version :10

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:XP_687092.1 Gene:si:dkey-49n23.1 / 558742 ZFINID:ZDB-GENE-050208-762 Length:758 Species:Danio rerio


Alignment Length:808 Identity:216/808 - (26%)
Similarity:345/808 - (42%) Gaps:175/808 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LWLLLILSLLTLEGPQPSTGSGYTTKSSVDLLENDSRYISYQDLMSTAKRFYD-PETTWYSEMLF 78
            ||...:.|||.|.....:.|:..|.:..:...|..||        :.:..|:| .|...|..:|.
Zfish     6 LWRTGLFSLLLLSLLHCNAGNQNTPRLQLTHTELRSR--------NDSAVFWDGGEGGAYQALLL 62

  Fly    79 DVARNQVIVGARDTLYRMSFD--LEPLERASWGATPSEIAMCQAKGQS-ERWCRNYVRVLHSYGE 140
            |..|..::||.||.:|.::.|  .:|..:..|.|....|..|:..|:: ...|.||||:|..:.:
Zfish    63 DEDRGWLLVGGRDHIYMLNSDSLTQPSRKIHWPAGQEHIERCKYAGKNLSMDCANYVRLLQPFNK 127

  Fly   141 NQLYACGTNAFQPSCSWRQM---------ENLTVTGVDSGVVKCPFHPQANSTSLLQSNGQLFVG 196
            ..:|.|||.||.|.|::..:         :.|:..| :||..||||.||...|:.| ::|:|:.|
Zfish   128 THVYVCGTGAFHPQCTYIDLGHNLEKPTFQLLSHVG-ESGRGKCPFSPQEPFTARL-TDGELYAG 190

  Fly   197 TATDFSGSDVAILRTGVES-NKRFLRTKQYNNNWLSGAQFVGSFEA-------GHFVYFLLRESA 253
            ||.||.|::.||.||.|.| |:.::||:.|.::||:..:||||:..       ...|||..:|:|
Zfish   191 TAVDFMGTNAAIFRTSVHSNNQHYIRTEAYQDHWLNEPEFVGSYSIPDTHSLDDDKVYFFFKETA 255

  Fly   254 AEHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPGE--YPYYFDEIQGMTYAE 316
            .|.....|.||||||||||||:||...|: :.|::||||||.|::||.  ...:|||::.:...|
Zfish   256 VESNQLDKRIYSRVARVCKNDIGGKRSLI-NRWSTFLKARLVCTVPGPGGMDTHFDELEDIFLLE 319

  Fly   317 SES----ILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQQEHSDAAWKTVNTNQRSQFQ-- 375
            ::.    ::|..|.||.|...|||||.|:::||.|||:|||..:|..|..|        .:::  
Zfish   320 TKDPQNPVIYGVFSTSSSVFRGSAVCVYSMASIRAAFNGPFAHKESPDYRW--------MEYKGK 376

  Fly   376 --------CGTSSIGHWLESSR------------YQLMDEAVQPIGAEPLYHSKLE---QFGRLA 417
                    |.:.:.....:|:|            :|||.|.|.||...|:: :::.   :..:|.
Zfish   377 IPYPRPGTCPSETYDALYKSTRDFPDDVVSFMRAHQLMWEPVVPIHRRPVF-TRINTPYRLKKLV 440

  Fly   418 LDIINTKTEQVHVLFVAS-SGNHIKKLSVKYDGDGVQTCLVELWQADDTGTSSLLNMAYLKVSDS 481
            :|.::.:..|..||.:.: .|..:|.:||..:...::..::|......|.| .:|:|........
Zfish   441 VDRVDAEDGQYDVLHLGTDDGRVLKVVSVPKENWEIEEIILEELNVFKTQT-PILSMELSTKRQV 504

  Fly   482 LYLGTDLALTRIPAQHCSRHVSQS-SCLNSMDPYCGWNELVERCMPQPQDSSVLQHWHQAPQITC 545
            |::.:|..:.::|.|.|..:.... .|..:.||||.|:           .||...::   |....
Zfish   505 LFISSDENVVQLPVQRCELYGKACVDCCLARDPYCAWD-----------GSSCTNYF---PSNKR 555

  Fly   546 PVLNAPIDGGWSTWSPWAVCQQHEQPDSNCQCRQ----------RSC--NNP--------QPQHG 590
            ......:..|    .||:.||.......|.:.:.          ..|  |:|        ||.|.
Zfish   556 RARRQDVRYG----DPWSQCQDMRDGSENAELKTVYGVETNSTFLECVSNSPQATIKWIFQPNHS 616

  Fly   591 GATCE-------------GISTQVTNCTQHGGWTEWSAWSPCSQTCG-----IAVKIRRRTCGNP 637
            ..:.|             |:..|....|..|.:...:.....|:|..     :..:.:.....|.
Zfish   617 QNSKELVPGEENLLHMQRGLLLQQITSTNAGLYLCMAFEHSFSRTLARYELHVIPQNQMSRAQNN 681

  Fly   638 RPAFGGRTC----------VGSEQSEMYCRHLPPCPVAKPQSVDGGWGPWG------------EW 680
            .|.....:.          ||...::.||.||                 |.            :|
Zfish   682 LPGNHATSLRSYKELHLMGVGGLTADEYCEHL-----------------WYREKRRQHKHRTLKW 729

  Fly   681 SECSAQCGGGFRMRRRECNDP-APLNGG 707
            .:.|.....  |:||:  |.| .||:||
Zfish   730 KQVSENRKA--RVRRQ--NPPDEPLDGG 753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 155/483 (32%)
PSI 497..546 CDD:396154 10/49 (20%)
TSP1 556..607 CDD:214559 15/83 (18%)
TSP1 610..663 CDD:214559 10/67 (15%)
TSP1 674..725 CDD:214559 12/47 (26%)
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
si:dkey-49n23.1XP_687092.1 Sema_3 48..521 CDD:200500 156/485 (32%)
PSI 520..557 CDD:214655 10/50 (20%)
Ig_Sema3 580..672 CDD:409455 14/91 (15%)
Ig strand A 580..586 CDD:409455 1/5 (20%)
Ig strand B 591..599 CDD:409455 0/7 (0%)
Ig strand C 605..611 CDD:409455 0/5 (0%)
Ig strand C' 613..616 CDD:409455 1/2 (50%)
Ig strand D 627..631 CDD:409455 0/3 (0%)
Ig strand E 634..641 CDD:409455 2/6 (33%)
Ig strand F 647..656 CDD:409455 1/8 (13%)
Ig strand G 659..672 CDD:409455 2/12 (17%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.