DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and sema6cb

DIOPT Version :10

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:XP_073781138.1 Gene:sema6cb / 556743 ZFINID:ZDB-GENE-040724-119 Length:1105 Species:Danio rerio


Alignment Length:659 Identity:197/659 - (29%)
Similarity:298/659 - (45%) Gaps:105/659 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LWLLLILSLLTLE------GPQPSTGSGYTTKSSVDLLENDSRYISYQDLMS---TAKRFYDPET 70
            |.|.|:|:|..|:      .|.|.......|..|    |:...|.|:|..||   ||:...|   
Zfish    53 LALTLMLTLTCLKHLCHGATPFPQDLEPIRTVGS----EHTYLYPSFQGNMSDNDTARLGLD--- 110

  Fly    71 TWYSEMLFDVARNQVIVGARDTLY--RMSFDLE---PLERASWGATPSEIAMCQAKGQSERWCRN 130
              :..||  ...:.|.:.|||.::  .:|..||   |.::.:|  ...::..|..:|::...|.|
Zfish   111 --FQRML--RINHMVYIAARDHVFAINLSASLERIVPQQKLTW--KTKDVEKCTVRGKNSDECYN 169

  Fly   131 YVRVLHSYGENQLYACGTNAFQPSCSWRQMENLTVTGVD-SGVVKCPFHPQANSTSLLQSNGQLF 194
            |::||....:..|:|||||||.|:|...:|.:|...|.: .|..:|||..:.::..|. :.|..:
Zfish   170 YIKVLVPRNDETLFACGTNAFNPTCRNYKMSSLEQDGEEVIGQARCPFESRQSNVGLF-AGGDFY 233

  Fly   195 VGTATDFSGSDVAILRTGVESNKRFLRTKQYNNNWLSGAQFVGSFEAGHFVYFLLRESAAEHMSC 259
            ..|.|||..||..|.|:..||:. .|||.:|::.||....|:.:.|.|::|||.|.|.|.|:.:.
Zfish   234 SATMTDFLASDAVIYRSLGESSP-VLRTVKYDSKWLREPHFLHAIEYGNYVYFFLSEIAVEYTTL 297

  Fly   260 GKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPGEYPYYFDEIQGMT---YAESESIL 321
            |||::||||||||||.||..::|...||||||||||||:||:..:|||.:|.:|   .......:
Zfish   298 GKVVFSRVARVCKNDNGGSPRVLERYWTSFLKARLNCSVPGDSFFYFDVLQSLTNVMQINHRPAV 362

  Fly   322 YATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQQEHSDAAWKTVN----TNQRSQFQCGTSSIG 382
            ...|.|..:||.||||||:.:..|...|:|.||:|.:|::||..|.    ...|.....|.....
Zfish   363 LGVFTTQANSITGSAVCAFYMDDIEKVFNGKFKEQRNSESAWTPVPDEAVPKPRPGSCAGDGPAA 427

  Fly   383 HWLESSR-----------YQLMDEAVQPIGAEPLYHSKLEQF--GRLALDIINTKTEQVHVLFVA 434
            .:..|:.           |.||||||..:...|.:.....:|  .::|:|......:...|:|:.
Zfish   428 GYKSSTNFPDETLTFIKSYPLMDEAVPSVNNRPCFTRTTSRFKLTQIAVDTAAGPYKNYTVVFLG 492

  Fly   435 SSGNHI-KKLSVKYDGDGVQTCLVELWQADDTGTSSLLNMAYLKVSDSLYLGTDL---------- 488
            |...|: |.|:..:......|.::|     |....: .|...::..|...||.:|          
Zfish   493 SENGHVLKVLASMHPNSSYSTQVLE-----DIDVYN-PNKCNVRGEDRRILGLELDKDHHALFVA 551

  Fly   489 ---ALTRIPAQHCSRH-VSQSSCLNSMDPYC-----------------GWNELVERCMPQPQDS- 531
               .:.|:|...||.: :.:.|||:|.||||                 |:.:.||...||..|| 
Zfish   552 FTGCVIRVPLSRCSDYGICRKSCLSSRDPYCIWLSAGNCATVAPGFKSGFEQYVESGYPQYPDSC 616

  Fly   532 -SVLQHWHQAPQITCPVLNAPIDGGWSTWSPWAVCQQHEQPDSNCQC-------RQRSCNNPQPQ 588
             .||        .|....|..:|..:...||.:....::.|....:.       |:....:|..:
Zfish   617 HDVL--------ATTRKQNPAVDSAYGKTSPTSASTTNQGPAGAPETGTHPEEGRRGGQGSPDLE 673

  Fly   589 HGGATCEGI 597
            .|....||:
Zfish   674 PGSVEMEGV 682

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 149/470 (32%)
PSI 497..546 CDD:396154 20/68 (29%)
TSP1 556..607 CDD:214559 8/49 (16%)
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
sema6cbXP_073781138.1 None
Blue background indicates that the domain is not in the aligned region.

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