DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema5c and SEMA4C

DIOPT Version :9

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:XP_016859882.1 Gene:SEMA4C / 54910 HGNCID:10731 Length:875 Species:Homo sapiens


Alignment Length:657 Identity:181/657 - (27%)
Similarity:267/657 - (40%) Gaps:115/657 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 ISYQDLMSTAKRFYDPETTWYSEMLFDVARNQVIVGARDTLYRMSFDLEPLE---RASWGATPSE 114
            :|..:|.:..:||.......:..:........:.||||:.|:  :|.:|.||   ..||.|...:
Human    75 VSSGELATVVRRFSQTGIQDFLTLTLTEPTGLLYVGAREALF--AFSMEALELQGAISWEAPVEK 137

  Fly   115 IAMCQAKGQSERW-CRNYVRVLHSYGENQLYACGTNAFQPSCSWRQMENLTVT--GVDSGVVKCP 176
            ...|..||::.:. |.|::|.|..|..:.||.|||.||||.|::..|...|:.  ..:.|..|||
Human   138 KTECIQKGKNNQTECFNFIRFLQPYNASHLYVCGTYAFQPKCTYVNMLTFTLEHGEFEDGKGKCP 202

  Fly   177 FHPQANSTSLLQSNGQLFVGTATDFSGSDVAILRT-GVESNKRFLRTKQYNNNWLSGAQFVGSF- 239
            :.|......|| .:|:|:..|..:|.|::..|||. |...:.:    .:|...||:...||||. 
Human   203 YDPAKGHAGLL-VDGELYSATLNNFLGTEPIILRNMGPHHSMK----TEYLAFWLNEPHFVGSAY 262

  Fly   240 ---EAGHF------VYFLLRESAAEHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLN 295
               ..|.|      |||..||.|.|.....:.:.:|||||||.|:||...|.| .||:||||||.
Human   263 VPESVGSFTGDDDKVYFFFRERAVESDCYAEQVVARVARVCKGDMGGARTLQR-KWTTFLKARLA 326

  Fly   296 CSLPGEYPYYFDEIQGMTYAESES----ILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQQ 356
            ||.| .:..||:::|.|...:..|    ..:..|:.....::.||:|.|.|..|...|:||:|:.
Human   327 CSAP-NWQLYFNQLQAMHTLQDTSWHNTTFFGVFQAQWGDMYLSAICEYQLEEIQRVFEGPYKEY 390

  Fly   357 EHSDAAWKTVNTNQRSQFQCGTSSIGHW---------LE--------SSRYQLMDEAVQPIGAEP 404
            ......|... |:.....:.| |.|.:|         ||        ..::.||:|.|.|..:.|
Human   391 HEEAQKWDRY-TDPVPSPRPG-SCINNWHRRHGYTSSLELPDNILNFVKKHPLMEEQVGPRWSRP 453

  Fly   405 LYHSKLEQFGRLALDIIN-----TKTEQVHVLFVAS-SGNHIKKLSVKYDGDGVQTCLVELWQAD 463
            |...|...|..|..|.:.     |.|    |||:.: .|..:|.:|:     |....|:|..|..
Human   454 LLVKKGTNFTHLVADRVTGLDGATYT----VLFIGTGDGWLLKAVSL-----GPWVHLIEELQLF 509

  Fly   464 DTGTSSLLNMAYLKVSDS---LYLGTDLALTRIPAQHCSRHVSQSSCLNSMDPYCGWNELVERCM 525
            |...     |..|.:|.|   |:.|:...|.::|...|.::.|.:.|:.:.||||.|:....||:
Human   510 DQEP-----MRSLVLSQSKKLLFAGSRSQLVQLPVADCMKYRSCADCVLARDPYCAWSVNTSRCV 569

  Fly   526 P--QPQDSSVLQHWHQAPQITCPVLNAPIDGGWSTWSPWAVCQQHEQPDSNCQCRQRSCNNPQPQ 588
            .  ....|.::||          |:.:                     |::..|..|.....:|.
Human   570 AVGGHSGSLLIQH----------VMTS---------------------DTSGICNLRGSKKVRPT 603

  Fly   589 HGGATCEGISTQVTNC-----TQHGGWTEWSAWSPCSQTCGIAVKIRRRT----CGNPRPAFGGR 644
            ....|....:..|..|     ..|..||......|..|........|.:.    ...||.| |..
Human   604 PKNITVVAGTDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLYDARLQALVVMAAQPRHA-GAY 667

  Fly   645 TCVGSEQ 651
            .|...||
Human   668 HCFSEEQ 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 144/477 (30%)
PSI 497..546 CDD:279745 13/50 (26%)
TSP1 556..607 CDD:214559 7/55 (13%)
TSP1 610..663 CDD:214559 12/46 (26%)
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
SEMA4CXP_016859882.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.