DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and sema3gb

DIOPT Version :9

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:XP_005167089.1 Gene:sema3gb / 544660 ZFINID:ZDB-GENE-050513-4 Length:746 Species:Danio rerio


Alignment Length:652 Identity:187/652 - (28%)
Similarity:301/652 - (46%) Gaps:109/652 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LLLILSLLTLEGPQPSTGSGYTTKSSVDLLENDSRYISYQDLM--STAKRF-YDPETTWYSEMLF 78
            ||.:|||..       .|....|:::..:      ::||::|:  .|.:.| :...|:.|..:..
Zfish     5 LLFVLSLCV-------WGCHGNTRTTPRV------HLSYKELLETKTIRPFSFSFNTSDYRILHM 56

  Fly    79 DVARNQVIVGARDTLYRMSFDLEPLER----ASWGATPSEIAMCQAK---GQSERWCRNYVRVLH 136
            |..:.::.:|:|:  |.:|.|::.:.:    ..|.||......|:..   ||.|  |.|:||::.
Zfish    57 DQDQGRLYLGSRE--YLVSLDMQNVNKEPLIIHWPATTQRKGECKLTGKGGQGE--CANFVRLIE 117

  Fly   137 SYGENQLYACGTNAFQPSCS-----WRQMENL--TVTG-VDSGVVKCPFHP-QANSTSLLQSNGQ 192
            .:....||.|||.|::|.|:     ||..|.|  .|.| ||||..|.|:.| |.|:.:|:  ||.
Zfish   118 PWNRTHLYTCGTGAYKPICTFINRGWRAEEYLFRLVPGYVDSGKGKSPYDPRQENAAALI--NGN 180

  Fly   193 LFVGTATDFSGSDVAILRTGVESNKRFLRTKQYNNNWLSGAQFV-------GSFEAGHFVYFLLR 250
            |:.|...||.|:|.||.||  ..::..:||:||::.||:...|:       .:.:....:||..|
Zfish   181 LYSGVHVDFMGTDPAIFRT--LGDRPAVRTEQYDSRWLNEPVFIKIQKIPDSAEKNDDKLYFFFR 243

  Fly   251 ESAAEHMSCGKV--IYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPGE--YPYYFDEIQG 311
            |.:.: .|.|..  :.:||.|||.||.||...|: :.||:||||||.||:.|.  ...||||::.
Zfish   244 EKSLD-ASGGSAPSVLARVGRVCLNDDGGQRSLV-NKWTTFLKARLVCSVIGADGVETYFDELRD 306

  Fly   312 M----TYAESESILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQQEHSDAAWKTVNTNQRS 372
            :    |:.|...|:||.|.|:||...|||||.|::|.|...|:|||..:...:..| |..|.:..
Zfish   307 VFIQRTHDERNPIVYAVFSTAGSVFKGSAVCVYSMSDIRNVFNGPFSHKHGHNYQW-TPYTGKIP 370

  Fly   373 QFQCGTSSIGHW---LESSRYQLMDEAVQPIGAEPLYHSKL---------------EQFGRLALD 419
            ..:.||...|.:   |.::: ...||||..:.|.||.:..:               .:|..:|:|
Zfish   371 YPRPGTCPGGTFTPDLHTTK-AFSDEAVNFVRAHPLMYQPIYPIHKRPLVVRTGVDYRFTTIAVD 434

  Fly   420 IINTKTEQVHVLFVASSGNHIKKLSV-KYDGDGVQTCLVELWQADDTGTSSLLNMAYLKVS---D 480
            :::....:..|||:.:....::|:.| ..|....:..::|..:...|..:    :..||:|   .
Zfish   435 LVDAVDGRYEVLFLGTDRGTVQKVIVLPKDISTTEELILEEVEVFKTPAA----VKTLKISTKRQ 495

  Fly   481 SLYLGTDLALTRIPAQHCSRH-VSQSSCLNSMDPYCGWNELVERC---MPQPQDSSVLQH-WHQA 540
            .||:.::..||::....|:.: .:.|.|..:.||||.|:.  |.|   .|..:..|..|. .|..
Zfish   496 QLYVSSERGLTQVSLHRCAVYGKACSDCCLARDPYCAWDG--EHCSAFTPATKRRSRRQDIKHGD 558

  Fly   541 PQITCPVLNAPID-----------GGWSTW------SPWAVCQQHEQPDSNCQCRQRSCNNPQPQ 588
            |...|...||.::           .|.||:      ||.|..:...|.|...:...|.....:..
Zfish   559 PLRQCRGFNAKVEKRLRETVQFGVEGSSTFLECQPRSPQATVKWLFQKDGRRKALSRDKEVLKTG 623

  Fly   589 HG 590
            ||
Zfish   624 HG 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 147/484 (30%)
PSI 497..546 CDD:279745 15/53 (28%)
TSP1 556..607 CDD:214559 10/41 (24%)
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
sema3gbXP_005167089.1 Sema_3F 42..513 CDD:200515 147/486 (30%)
PSI 512..558 CDD:214655 14/47 (30%)
Ig_Semaphorin_classIII 576..662 CDD:143279 11/50 (22%)
IG_like 581..651 CDD:214653 11/45 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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