DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and Sema2a

DIOPT Version :10

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster


Alignment Length:832 Identity:234/832 - (28%)
Similarity:368/832 - (44%) Gaps:190/832 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 MLILKLPKMFSQLWLLLILSLLTLEGPQPSTGSGYTTKSSVDLLENDSRYISYQDLMSTAKRFYD 67
            |.:|:|..:.: |.|||..|:........:|.:.|..:..  ...||....:|....:...|.::
  Fly     1 MSLLQLSPLLA-LLLLLCSSVSETAADYENTWNFYYERPC--CTGNDQGNNNYGKHGADHVREFN 62

  Fly    68 PETTWYSEMLFDVARNQVIVGARDTLYRMS-------------FDLEPLERASWGATPSEIAMCQ 119
            ....:|.....:..|:.:.|||.|.::|::             .:|||        |..::..|.
  Fly    63 CGKLYYRTFHMNEDRDTLYVGAMDRVFRVNLQNISSSNCNRDVINLEP--------TRDDVVSCV 119

  Fly   120 AKGQSERW-CRNYVRVLHSYGE-NQLYACGTNAFQPSCSWRQMENLT-------VTGVDSGVVKC 175
            :||:|:.: |:|:|||:.|..: ::||.|||||..|. .:....|||       |.||..|:.||
  Fly   120 SKGKSQIFDCKNHVRVIQSMDQGDRLYVCGTNAHNPK-DYVIYANLTHLPRSEYVIGVGLGIAKC 183

  Fly   176 PFHPQANSTSLLQSNGQ------LFVGTATDFSGSDVAILRTGV--ESNKR----FLRTKQYNNN 228
            |:.|..|||::...||.      |:.||..:|:.:|..|.||.:  .|.||    |.||.:|::.
  Fly   184 PYDPLDNSTAIYVENGNPGGLPGLYSGTNAEFTKADTVIFRTDLYNTSAKRLEYKFKRTLKYDSK 248

  Fly   229 WLSGAQFVGSFEAGHFVYFLLRESAAEHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKAR 293
            ||....|||||:.|.:|||..||:|.|:::|||.:|||:|||||.|| ||..||..||.::||||
  Fly   249 WLDKPNFVGSFDIGEYVYFFFRETAVEYINCGKAVYSRIARVCKKDV-GGKNLLAHNWATYLKAR 312

  Fly   294 LNCSLPGEYPYYFDEIQGMTYAESE-SILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQQE 357
            ||||:.||:|:||:|||.:....|: |..:|||.||.:.:.|||||:::::.|.|||:|.||:|.
  Fly   313 LNCSISGEFPFYFNEIQSVYQLPSDKSRFFATFTTSTNGLIGSAVCSFHINEIQAAFNGKFKEQS 377

  Fly   358 HSDAAWKTVNTNQRSQFQCGT---------SSIGHWLESSRYQLMDEAVQPIGAEPLYHSKLEQF 413
            .|::||..|..::..:.:.||         .::.:::.|  :.|||:||......|:|:.:...|
  Fly   378 SSNSAWLPVLNSRVPEPRPGTCVNDTSNLPDTVLNFIRS--HPLMDKAVNHEHNNPVYYKRDLVF 440

  Fly   414 GRLA-----LDIINTKTEQVHVLFVASSGNHIKKLSVKY--DGDGVQTCLVELWQADDTGTSSLL 471
            .:|.     :||:|   ::..|.:|.::...|.|: |:|  :|:.:.. |:::::........::
  Fly   441 TKLVVDKIRIDILN---QEYIVYYVGTNLGRIYKI-VQYYRNGESLSK-LLDIFEVAPNEAIQVM 500

  Fly   472 NMAYLKVSDSLYLGTDLALTRIPAQHCSRHVSQSSCLNSM-DPYCGWNELVERCMPQPQ------ 529
            .::  :...|||:|||..:.:|....|:|.  ..:|...: ||||||::....|.|...      
  Fly   501 EIS--QTRKSLYIGTDHRIKQIDLAMCNRR--YDNCFRCVRDPYCGWDKEANTCRPYELDLLQDV 561

  Fly   530 --------DSSVLQH-----WHQAPQITCPV-LNAPIDGGWSTWSPWAVCQQHEQPDSNCQCRQR 580
                    |||||:.     :.|:..:.|.| :...:.....||       .|...|..   |..
  Fly   562 ANETSDICDSSVLKKKIVVTYGQSVHLGCFVKIPEVLKNEQVTW-------YHHSKDKG---RYE 616

  Fly   581 SCNNPQPQHGGATCEGISTQVTNCTQHGGWTEWSAWSPCSQTCGIAVKIRRRTCGNPRPAFGGRT 645
            ...:|             |:....|:.|               .:.|.:..        |.||| 
  Fly   617 IRYSP-------------TKYIETTERG---------------LVVVSVNE--------ADGGR- 644

  Fly   646 CVGSEQSEMYCRHLPPCPVAKPQSVDGGWGPWGEWSECSAQCGGGFRMRRRECNDPAPLNGGMEC 710
                     |..||            ||          |..|.....:....|..|...|     
  Fly   645 ---------YDCHL------------GG----------SLLCSYNITVDAHRCTPPNKSN----- 673

  Fly   711 PGCRLDYEECNMQSCQEVRKL-SAWTPW-----LTVTGSGNSSEPHMERRFR 756
                 ||::.....|.|..|. :|...|     ...|....||..|....||
  Fly   674 -----DYQKIYSDWCHEFEKYKTAMKSWEKKQAQCSTRQNFSSNQHPNEIFR 720

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 164/481 (34%)
PSI 497..546 CDD:396154 17/68 (25%)
TSP1 556..607 CDD:214559 8/50 (16%)
TSP1 610..663 CDD:214559 8/52 (15%)
TSP1 674..725 CDD:214559 7/50 (14%)
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 164/475 (35%)
PSI 527..>550 CDD:396154 8/24 (33%)
Ig_Semaphorin_C 573..668 CDD:409368 27/172 (16%)
Ig strand A 573..579 CDD:409368 2/5 (40%)
Ig strand B 583..591 CDD:409368 1/7 (14%)
Ig strand C 601..607 CDD:409368 2/12 (17%)
Ig strand C' 609..612 CDD:409368 0/2 (0%)
Ig strand D 622..626 CDD:409368 1/3 (33%)
Ig strand E 630..637 CDD:409368 2/21 (10%)
Ig strand F 643..652 CDD:409368 7/40 (18%)
Ig strand G 655..668 CDD:409368 2/12 (17%)
Blue background indicates that the domain is not in the aligned region.

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