DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and Sema6a

DIOPT Version :10

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:XP_003751830.1 Gene:Sema6a / 361324 RGDID:1305493 Length:1048 Species:Rattus norvegicus


Alignment Length:554 Identity:166/554 - (29%)
Similarity:270/554 - (48%) Gaps:63/554 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LLLILSLLTLEG---PQPS-----TGSGYTTKSSVDLLENDSRYISYQDLMSTAKRFYDPETTWY 73
            |||.|:||...|   |:.|     :...||.:..|        ::.::...:|.:|..      .
  Rat     6 LLLCLTLLRCAGAGFPEDSEPISISHGNYTKQYPV--------FVGHKPGRNTTQRHR------L 56

  Fly    74 SEMLFDVARNQVIVGARDTLYRMSFDLEPLE------RASWGATPSEIAMCQAKGQSERWCRNYV 132
            ...:..:....:.:.|||.:|.:..|....|      :.:|.:..:::..|:.||:.:..|.|::
  Rat    57 DIQMIMIMNRTLYIAARDHIYTVDIDTSHTEEIYCSKKLTWKSRQADVDTCRMKGKHKDECHNFI 121

  Fly   133 RVLHSYGENQLYACGTNAFQPSCSWRQMENLTVTGVD-SGVVKCPFHPQANSTSLLQSNGQLFVG 196
            :||....::.|:.||||||.|||...:::.|...|.: ||:.:||:..:..:.:|. ::|:|:..
  Rat   122 KVLLKKNDDTLFVCGTNAFNPSCRNYRVDTLETFGDEFSGMARCPYDAKHANIALF-ADGKLYSA 185

  Fly   197 TATDFSGSDVAILRTGVESNKRFLRTKQYNNNWLSGAQFVGSFEAGHFVYFLLRESAAEHMSCGK 261
            |.|||...|..|.|:..:|..  |||.::::.||....||.:.:.|.::||..||.|.|:.:.||
  Rat   186 TVTDFLAIDAVIYRSLGDSPT--LRTVKHDSKWLKEPYFVQAVDYGDYIYFFFREIAVEYNTMGK 248

  Fly   262 VIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPGEYPYYFDEIQGMT---YAESESILYA 323
            |::.|||:|||||:||..::|...||||||||||||:||:..:||:.:|.:|   ......::.|
  Rat   249 VVFPRVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPGDSHFYFNILQAVTDVIRINGRDVVLA 313

  Fly   324 TFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQQEHSDAAWKTVNTNQ----RSQFQCGTSSIGHW 384
            ||.|..:||.|||||||::..|...|.|.||:|:..|:.|..|...:    |.....|:||:..:
  Rat   314 TFSTPYNSIPGSAVCAYDMLDIANVFTGRFKEQKSPDSTWTPVPDERVPKPRPGCCAGSSSLEKY 378

  Fly   385 LESSRY-----------QLMDEAVQPIGAEPLYHSKLEQF--GRLALDIINTKTEQVHVLFVASS 436
            ..|:.:           .||||||..|...|.:...:.::  .::|:|......|...|:|:.|.
  Rat   379 ATSNEFPDDTLNFIKTHPLMDEAVPSIINRPWFLRTMVRYRLTKIAVDNTAGPYENHTVVFLGSE 443

  Fly   437 GNHIKKLSVKYDGDG----------VQTCLVELWQADDTGTSSLLNMAYLKVSDSLYLGTDLALT 491
            ...|.|...:....|          :.....|....|......::.|...|.|.|||:.....:.
  Rat   444 KGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDKASGSLYVAFSTCVI 508

  Fly   492 RIPAQHCSRH-VSQSSCLNSMDPYCGWNELVERC 524
            ::|...|.|| ..:.:|:.|.||||||.:....|
  Rat   509 KVPLGRCERHGKCKKTCIASRDPYCGWVKETGSC 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 140/467 (30%)
PSI 497..546 CDD:396154 12/29 (41%)
TSP1 556..607 CDD:214559
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
Sema6aXP_003751830.1 Sema_6A 48..513 CDD:200527 142/473 (30%)
PSI 514..>544 CDD:396154 12/29 (41%)
Blue background indicates that the domain is not in the aligned region.

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