DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and Sema7a

DIOPT Version :9

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:NP_001101623.1 Gene:Sema7a / 315711 RGDID:1305192 Length:666 Species:Rattus norvegicus


Alignment Length:668 Identity:155/668 - (23%)
Similarity:247/668 - (36%) Gaps:120/668 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ILKLPKMFS---QLWLLLILSLLTLEGPQPSTGSG------YTTKSSVDLLENDSRYISYQDLMS 60
            :|.||..|.   :|.|||:. .:|....|..:.||      :..:..||                
  Rat    18 VLSLPARFGLPLRLRLLLVF-WVTAASAQGHSRSGPRISAVWKGQDHVD---------------- 65

  Fly    61 TAKRFYDPETTWYSEMLFDVARNQVIVGARDTLYRMSFDLEPLERASWGATPSEIAMCQAKGQSE 125
                |..||.  ::.:..:.....|.||.|..:|..:|.    |..:.......|...:...|.:
  Rat    66 ----FGQPEP--HNVLFHEPGSFSVWVGGRGKVYLFNFP----EGKNASVRTVNIGSTKGSCQDK 120

  Fly   126 RWCRNYVRVLHSYGENQLYACGTNAFQPSCSWRQMENLTVTGVDSGVVKCPFHPQANSTSLLQSN 190
            :.|.||:.:|...| |.|..|||||.:||| |..:.:..|..:.......||.|..||..|.:.:
  Rat   121 QDCENYITLLERRG-NGLLVCGTNARKPSC-WNLVNDSVVMSLGEMKGYAPFSPDENSLVLFEGD 183

  Fly   191 GQLFVGTATDFSGSDVAILRTGVESNKRFLRTKQYNNNWLSGAQFVGSFEA-GHFVYFLLRESAA 254
            .........:::|......|...||......|...|..::. |..|...:| ...:|:..||...
  Rat   184 EVYSTIRKQEYNGKIPRFRRIRGESELYTSDTVMQNPQFIK-ATIVHQDQAYDDKIYYFFREDNP 247

  Fly   255 EHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPGEYPYYFDEIQGMTYAESES 319
            :......:..||||::|:.|.||...|....|.:||||.|.|| .......|:.:|.:......|
  Rat   248 DKNPEAPLNVSRVAQLCRGDQGGESSLSVSKWNTFLKAMLVCS-DAATNRNFNRLQDVFLLPDPS 311

  Fly   320 ILYATFRTSGSSIFG-----SAVCAYNLSSINAAFDGPFKQQEHSDAAWKTVNTNQRSQFQCGTS 379
            ..:...|..|  :|.     ||||.|:|..|:..|                 .|:....:..|..
  Rat   312 GQWRDTRVYG--VFSNPWNYSAVCVYSLGDIDRVF-----------------RTSSLKGYHMGLP 357

  Fly   380 S--IGHWLESSR------YQLMD------EAVQPIG--AEPLYHSKLEQFGRLALDIINTKTEQV 428
            :  .|..|...:      :|:.|      :.|:|:|  ..||:|||......:...:..:..|..
  Rat   358 NPRPGMCLPKKQPIPTETFQVADSHPEVAQRVEPMGPLKTPLFHSKYHYQKVVVHRMQASNGETF 422

  Fly   429 HVLFVASSGNHIKKLSVKYDGDGVQTCLVELWQADDTGTSSLLNMAYLKVS-DSLYLGTDLALTR 492
            |||::.:....|.|  |...||...:.:..:.:......::.:....|... ..||:.:...:::
  Rat   423 HVLYLTTDRGTIHK--VVESGDQEHSFVFNIMEIQPFHRAAAIQAISLDADRRKLYVTSPWEVSQ 485

  Fly   493 IPAQHCSRHVSQ-SSCLNSMDPYCGWNELVERCMP-QPQDSSVLQHWHQA-PQITCP-------- 546
            :|...|..:... ..||.|.||||||::..:||:. .....||||..:.| |...||        
  Rat   486 VPLDMCGVYSGGCHGCLMSRDPYCGWDQDQDRCVSIYSSQRSVLQSINPAEPHRECPNPNPDEAP 550

  Fly   547 ------------VLNAPIDGGWSTWSPWAVCQQHEQPDSNCQ--CRQRSC-----NNPQPQHGGA 592
                        .|..|::...:|:. |   :..|..:.:|:  .:..||     |....|:|..
  Rat   551 LQKVSLARNSRYYLTCPMESRHATYL-W---RHEENVEQSCEPGHQSPSCILFIENLTARQYGHY 611

  Fly   593 TCEGISTQVTNCTQHGGW 610
            .||.......:..||  |
  Rat   612 RCEAQEGSYLHEAQH--W 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 105/453 (23%)
PSI 497..546 CDD:279745 18/51 (35%)
TSP1 556..607 CDD:214559 11/57 (19%)
TSP1 610..663 CDD:214559 1/1 (100%)
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
Sema7aNP_001101623.1 PSI 491..>520 CDD:279745 12/28 (43%)
Ig 549..622 CDD:299845 13/76 (17%)
Sema_7A 70..489 CDD:200504 103/449 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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