Sequence 1: | NP_611293.3 | Gene: | Sema5c / 37066 | FlyBaseID: | FBgn0284221 | Length: | 1093 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001012078.2 | Gene: | Sema4a / 310630 | RGDID: | 1304636 | Length: | 762 | Species: | Rattus norvegicus |
Alignment Length: | 669 | Identity: | 184/669 - (27%) |
---|---|---|---|
Similarity: | 290/669 - (43%) | Gaps: | 130/669 - (19%) |
- Green bases have known domain annotations that are detailed below.
Fly 4 LILKLPKMFSQLWLLL------ILSLLTL--------EGPQP----STGSGYTTKSSVDLLENDS 50
Fly 51 RYISYQDLMSTAKRFYDPETTWYSEMLFDVARNQVIVGARDTLYRMSFDLEPLER----ASWGAT 111
Fly 112 PSEIAMCQAKGQS-ERWCRNYVRVLHSYGENQLYACGTNAFQPSCSWRQMEN-----LTVTGVDS 170
Fly 171 GVVKCPFHPQANSTSLLQSNGQLFVGTATDFSGSDVAILRT----GVESNKRFLRTKQYNNNWL- 230
Fly 231 SGAQFVGSFEAGHFVYFLLRESAAEHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLN 295
Fly 296 CSLPGEYPYYFDEIQGMTYAESESI--LYATFRTSGSSIFG---SAVCAYNLSSINAAFDGPFKQ 355
Fly 356 QEHSDAAWKTV---NTNQRSQFQCGTSSIGHWLESS-----RYQLMDEAVQPIGAEPLYHSKLEQ 412
Fly 413 FGRLALDIINTKTEQVH-VLFVASSGNHIKKLSVKYDGDGVQTCLVELWQADDTGTSSLLNMAYL 476
Fly 477 KVSDSLYLGTDLALTRIPAQHCSRHVSQSSCLNSMDPYCGWNELVERCMPQPQDSSVLQ----HW 537
Fly 538 HQ-----APQITC---PVLNAPIDGGWSTWSPWAVCQQHEQPDSNCQCRQRSCNNPQPQ------ 588
Fly 589 ----HGGATCEGISTQVTN 603 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Sema5c | NP_611293.3 | Sema_5C | 65..496 | CDD:200526 | 139/459 (30%) |
PSI | 497..546 | CDD:279745 | 15/60 (25%) | ||
TSP1 | 556..607 | CDD:214559 | 13/58 (22%) | ||
TSP1 | 610..663 | CDD:214559 | |||
TSP1 | 674..725 | CDD:214559 | |||
TSP1 | 802..834 | CDD:214559 | |||
TSP1 | 853..901 | CDD:214559 | |||
TSP1 | 906..953 | CDD:214559 | |||
Sema4a | NP_001012078.2 | Sema | 57..497 | CDD:301699 | 139/469 (30%) |
PSI | 498..542 | CDD:214655 | 13/50 (26%) | ||
Ig | 567..639 | CDD:299845 | 11/49 (22%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3611 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D41799at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |