DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and Sema5a

DIOPT Version :9

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:NP_001101129.1 Gene:Sema5a / 310207 RGDID:1308650 Length:1074 Species:Rattus norvegicus


Alignment Length:1115 Identity:388/1115 - (34%)
Similarity:570/1115 - (51%) Gaps:126/1115 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 WLLLILSLLTLEGPQPSTGSGYTTKSSVDLLENDSRYISYQDLMSTAKRFYDPETTWYSEMLFDV 80
            ||...|.:..|..|:        |:........:...:||:::....:.|.......:|.:.||.
  Rat     9 WLFSSLGVWRLARPE--------TQDPAKCQRAEHPVVSYKEIGPWLREFRAENAVDFSRLTFDP 65

  Fly    81 ARNQVIVGARDTLYRMSF-DLEPLERASWGATPSEIAMCQAKGQSERWCRNYVRVLHSYGENQLY 144
            .:.:::||||:.|:|:.. ||..::...|....:....|.:||:|:..|:||:||| ..|.::|:
  Rat    66 GQKELVVGARNYLFRLQLEDLSLIQAVQWECDEATKKACYSKGKSKEECQNYIRVL-LVGGDRLF 129

  Fly   145 ACGTNAFQPSCSWRQMENLT-VTGVDSGVVKCPFHPQANSTSLLQSNGQLFVGTATDFSGSDVAI 208
            .||||||.|.|:.|.:.||| :....||:.:||:.||.|||:||.::|:|:..||.||.|.|.||
  Rat   130 TCGTNAFTPVCTIRSLSNLTEIHDQISGMARCPYSPQHNSTALLTASGELYAATAMDFPGRDPAI 194

  Fly   209 LRT-GVESNKRFLRTKQYNNNWLSGAQFVGSFEAGHFVYFLLRESAAEHMSCGKVIYSRVARVCK 272
            .|: |....   |||.|||:.||:...||.|::.|:|.||..||:|.|| .|||.::||.|||||
  Rat   195 YRSLGTLPP---LRTAQYNSKWLNEPNFVSSYDIGNFTYFFFRENAVEH-DCGKTVFSRAARVCK 255

  Fly   273 NDVGGGGQLLRDNWTSFLKARLNCSLPGEYPYYFDEIQGMTYAESESILYATFRTSGSSIFGSAV 337
            ||: ||..||.|.||:|:|||||||.|||.|:|::|:|...:.....::|..|.|:.:||..|||
  Rat   256 NDI-GGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQSTFFLPELDLIYGIFTTNVNSIAASAV 319

  Fly   338 CAYNLSSINAAFDGPFKQQEHSDAAWKTVNTNQRSQFQCGTSSIGHWL--------ESSRYQLMD 394
            |.:|||:|:.||:||||.||:|.:||... .|....|||||...|.::        ::.::.||.
  Rat   320 CVFNLSAISQAFNGPFKYQENSRSAWLPY-PNPNPNFQCGTMDQGLYVNLTERNLQDAQKFILMH 383

  Fly   395 EAVQPIGAEPLYHSKLEQFGRLALDIINTKTEQVHVLFVASSGNHIKKLSVKYDGDGVQTCLVEL 459
            |.|||:...|.:.....:|..:|:|::..:...||::::|:....|||:............|.|:
  Rat   384 EVVQPVTTVPSFMEDNSRFSHVAVDVVQGRDTLVHIIYLATDYGTIKKVRAPLSQSSGSCLLEEI 448

  Fly   460 WQADDTGTSSLLNMAYLKVSDSLYLGTDLALTRIPAQHCSRHVSQSSCLNSMDPYCGWNELVERC 524
            ....:..:..:.::..|.....|::|....:.:||.:.|..|.::.:|:.:.||||||:.::::|
  Rat   449 ELFPERKSEPIRSLKILHSQSVLFVGLQEHVVKIPLKRCHFHQTRGACIGAQDPYCGWDAVMKKC 513

  Fly   525 MPQPQDSSVLQHWHQAPQITCPVLNAPIDGGWSTWSPWAVCQQHE-QPDSNCQCRQRSCNNPQPQ 588
            ....:..|:.| |.|:.. |||..|..:||.:..||||..|...: ....:|.||.|||::|.||
  Rat   514 TSLEESLSMTQ-WDQSVP-TCPTRNLTVDGSFGPWSPWTPCTHTDGTAVGSCLCRSRSCDSPAPQ 576

  Fly   589 HGGATCEGISTQVTNCTQHGGWTEWSAWSPCSQTCGIAVKIRRRTCGNPRPAFGGRTCVGSEQSE 653
            .||..|||...::|||:::||||.|::|||||.||||..::|:|:|.||.|..|||.|||..:.|
  Rat   577 CGGWQCEGPRMEITNCSRNGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREE 641

  Fly   654 MYCRHLPPCPVAKPQSVDGGWGPWGEWSECSAQCGGGFRMRRRECNDPAPLNGGMECPGCRLDYE 718
            .||.....||   |.....||||   |..|:||||||.:.|||.|.:      |.:|.||.::|:
  Rat   642 RYCNEHLLCP---PHVFWTGWGP---WERCTAQCGGGIQARRRTCEN------GPDCAGCNVEYQ 694

  Fly   719 ECNMQSCQEVRKLSAWTPWLTVTGSGNSSEPHMERRFRFVCRATSPDPSSVRIGLPKEESRNCHA 783
            .||..:|.|::|.:.||||..|..|.|..  |.|:|||:.|:|..|||:.:.:|..:.|.|.|.:
  Rat   695 PCNTNACPELKKTTPWTPWTPVNISDNGG--HYEQRFRYTCKARLPDPNLLEVGRQRIEMRYCSS 757

  Fly   784 DGSCQRQVDHDSAD----------------SDAADWSPCSVSCGGGVQQRHR------------- 819
            ||:.....|..|.|                |....||.||..|..|::.|.|             
  Rat   758 DGTSGCSTDGLSGDFLRAGRYSAHTVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMP 822

  Fly   820 --GRGSQSRVCNIHACPAEEQLSSNSLDNELEHGEWGCWSEWSACSVTCGLGLRRRTRRC----- 877
              |...:.:.|||..||.:              |.|.|||.||.||.|||.|...|||.|     
  Rat   823 CLGPSLEFQECNILPCPVD--------------GVWSCWSSWSKCSATCGGGHYMRTRSCTNPAP 873

  Fly   878 LAGHDRLCQGRALEEQKCEMVPCEDFLGWSAWSEWSSCSSDGIRLRHRRCLVEQPGSMECRGAEF 942
            ..|.| :|.|...||..|....|.:  .||.|||||.|.:.|.::|.|:|::..|...:|.|...
  Rat   874 AYGGD-ICLGLHTEEALCNTQTCPE--NWSEWSEWSVCDASGTQVRTRQCILLFPVGSQCSGNTT 935

  Fly   943 EKTACV--PNECEETQTASTATLP----------IVIFVGLLFTVACCLAT---YRFTKKRFMLS 992
            |...||  .|...|...|.::::.          .::.|||..::..||.|   |.:.::....|
  Rat   936 ESRPCVFDSNFIPEVSVARSSSVEEKRCGEFNMFHMMAVGLSSSILGCLLTLLVYTYCQRYQQQS 1000

  Fly   993 AEEALNKTTTTTASFDTYPNQYSSLPTKDYYDQRPKRQSSFRMPAKTSNLGNGNGTLNRNNMHQN 1057
            .:..:....:..|...:..|..:.|   |.||      |...:.|...|    |..|...|.:.|
  Rat  1001 HDATVIHPVSPAALNSSITNHINKL---DKYD------SVEAIKAFNKN----NLILEERNKYFN 1052

  Fly  1058 NTPKVLAKTY 1067
              |.:..|||
  Rat  1053 --PHLTGKTY 1060

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 168/441 (38%)
PSI 497..546 CDD:279745 15/48 (31%)
TSP1 556..607 CDD:214559 22/51 (43%)
TSP1 610..663 CDD:214559 27/52 (52%)
TSP1 674..725 CDD:214559 22/50 (44%)
TSP1 802..834 CDD:214559 12/46 (26%)
TSP1 853..901 CDD:214559 23/52 (44%)
TSP1 906..953 CDD:214559 19/48 (40%)
Sema5aNP_001101129.1 Sema_5A 50..485 CDD:200524 168/441 (38%)
PSI 486..533 CDD:279745 15/48 (31%)
TSP1 544..595 CDD:214559 22/50 (44%)
TSP1 598..651 CDD:214559 27/52 (52%)
TSP1 656..702 CDD:214559 23/54 (43%)
TSP1 787..839 CDD:214559 13/51 (25%)
TSP1 853..896 CDD:214559 17/43 (40%)
TSP1 899..940 CDD:214559 16/40 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 305 1.000 Domainoid score I1320
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 678 1.000 Inparanoid score I690
OMA 1 1.010 - - QHG47498
OrthoDB 1 1.010 - - D41799at33208
OrthoFinder 1 1.000 - - FOG0003495
OrthoInspector 1 1.000 - - otm44984
orthoMCL 1 0.900 - - OOG6_106097
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2388
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.840

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