DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and sema3ab

DIOPT Version :9

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:NP_571136.1 Gene:sema3ab / 30267 ZFINID:ZDB-GENE-991209-6 Length:778 Species:Danio rerio


Alignment Length:605 Identity:166/605 - (27%)
Similarity:288/605 - (47%) Gaps:110/605 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LWLLLILSLLTLEGPQPSTGSGYTTKSSV--------DLLENDSRYISYQDLMSTAKRFYDPETT 71
            ||.:::| :.||..|:..| ....:||:|        ::||::: .:::..|.:::.        
Zfish     4 LWWIVLL-IWTLIAPERGT-VAQRSKSNVPRLKPSYKEMLESNN-LLTFNGLANSSA-------- 57

  Fly    72 WYSEMLFDVARNQVIVGARDTLYRMSFDLEPL----ERASWGATPSEIAMCQAKGQS-ERWCRNY 131
             |...|.|..|.::.|||:|  :.:||:|..:    :..||.::||....|:..|:. ::.|.|:
Zfish    58 -YHTFLLDEERGRLFVGAKD--HVLSFNLVDINMDQQLISWPSSPSRRDECKWAGKDVQKECANF 119

  Fly   132 VRVLHSYGENQLYACGTNAFQPSCS----WRQMENLTV---TGVDSGVVKCPFHPQANSTSLLQS 189
            ::||..:.:..||||||.||.|.|:    .::.|:.|.   :..::|..|.|:.|:..:.|:| .
Zfish   120 IKVLQPFNQTHLYACGTGAFHPVCAHVEVGKRSEDNTFRLGSSFENGRGKSPYDPKLQTASML-I 183

  Fly   190 NGQLFVGTATDFSGSDVAILRTGVESNKRFLRTKQYNNNWLSGAQFVGSFEAGHF---------- 244
            :|:|:.||:.||.|.|.||.||..:.:.  :||:|:::.||:..:||    :.|.          
Zfish   184 DGELYAGTSADFMGRDFAIFRTLGKHHP--IRTEQHDSRWLNDPRFV----SVHLIPESDNAEDD 242

  Fly   245 -VYFLLRESAAEHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPG--EYPYYF 306
             :|...||:|.:.....|..::|:.::||||.||...|: :.||:||||||.||:||  ....:|
Zfish   243 KIYLFFRENAIDGEQISKATHARIGQLCKNDFGGHRSLV-NKWTTFLKARLVCSVPGLNGIDTHF 306

  Fly   307 DEIQGMTYAESES----ILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQQEHSDAAWKTVN 367
            ||:|.:....|:.    |:||.|.||.:...|||||.|:::.|...|.||:..::..:..|... 
Zfish   307 DELQDVFLMSSKDPKNPIIYAVFTTSSNIFKGSAVCMYSMADIRRVFLGPYAHRDGPNYQWVPF- 370

  Fly   368 TNQRSQFQCGT--SSIGHWLESSR------------YQLMDEAVQPIGAEPL-------YHSKLE 411
            .|:....:.||  |......||::            :..|...|.||...|:       |     
Zfish   371 LNRVPYPRPGTCPSKTFDGFESTKDFPDDVITFARSHPAMYNPVFPINNHPIIIKTDVDY----- 430

  Fly   412 QFGRLALDIINTKTEQVHVLFVASS-GNHIKKLSVKYDGDGVQTCLVELWQADDT---GTSSLLN 472
            ||.::.:|.:..:..|..|:|:.:. |..:|.:|:.   .|....|.|:...:.|   ..:::..
Zfish   431 QFTQIVVDRVEAEDGQYDVMFIGTDMGTVLKVVSIP---RGTWHDLEEVLLEEMTVFREPTAITA 492

  Fly   473 MAYLKVSDSLYLGTDLALTRIPAQHCSRH-VSQSSCLNSMDPYCGWN-ELVERCMP------QPQ 529
            |........||||:.:.::::|...|..: .:.:.|..:.||||.|: ....|..|      :.|
Zfish   493 MELSTKQQQLYLGSAIGVSQMPLHRCDVYGKACAECCLARDPYCAWDGSQCSRYFPTAKRRTRRQ 557

  Fly   530 D---------SSVLQHWHQA 540
            |         .|.|||..:|
Zfish   558 DIRNGDPLTQCSDLQHHDEA 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 137/484 (28%)
PSI 497..546 CDD:279745 16/61 (26%)
TSP1 556..607 CDD:214559
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
sema3abNP_571136.1 Sema 27..519 CDD:301699 143/520 (28%)
PSI 517..>553 CDD:214655 9/35 (26%)
Ig_Semaphorin_classIII 583..673 CDD:143279
IG_like 586..654 CDD:214653
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 727..778
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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