DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and Sema4c

DIOPT Version :9

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:XP_006244820.1 Gene:Sema4c / 301346 RGDID:1562837 Length:856 Species:Rattus norvegicus


Alignment Length:782 Identity:209/782 - (26%)
Similarity:312/782 - (39%) Gaps:168/782 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 ISYQDLMSTAKRFYDPETTWYSEMLFDVARNQVIVGARDTLYRMSFDLEPLER---ASWGATPSE 114
            :|..:|::..:||.......:..:........:.||||:.|:  :|.:|.||.   .||.|...:
  Rat    55 VSSGELVTVVRRFSQTGIQDFLTLTLTDRSGLLYVGAREALF--AFSVEALELQGVISWEAPAEK 117

  Fly   115 IAMCQAKGQSERW-CRNYVRVLHSYGENQLYACGTNAFQPSCSWRQMENLTV--TGVDSGVVKCP 176
            ...|..||:|.:. |.|::|.|..|..:.||.|||.||||.|::..|...|:  ...:.|..|||
  Rat   118 KIECTQKGKSNQTECFNFIRFLQPYNASHLYVCGTYAFQPKCTYINMLTFTLDRAEFEDGKGKCP 182

  Fly   177 FHPQANSTSLLQSNGQLFVGTATDFSGSDVAILRTGVESNKRFLRTKQYNNNWLSGAQFVGSF-- 239
            :.|....|.|| .:|:|:..|..:|.|::..|||.....:.  ::| :|...||:...||||.  
  Rat   183 YDPAKGHTGLL-VDGELYSATLNNFLGTEPVILRNMGPHHP--IKT-EYLAFWLNEPHFVGSAFV 243

  Fly   240 --EAGHF------VYFLLRESAAEHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNC 296
              ..|.|      :||...|.|.|:....:.:.:|||||||.|: ||.:.|:..||:||||||.|
  Rat   244 PESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVARVARVCKGDM-GGARTLQKKWTTFLKARLVC 307

  Fly   297 SLPGEYPYYFDEIQ------GMTYAESESILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQ 355
            |.| ::..||::::      |.::  ..:..:|.|:.....:..||||.|.|..|...|:|||| 
  Rat   308 SAP-DWKVYFNQLRAVHTLLGASW--HNTTFFAVFQARWGDMDLSAVCEYQLEHIQQVFEGPFK- 368

  Fly   356 QEHSDAAWKTVNTNQRSQFQCGTSSIGHWLESSRY-----------------QLMDEAVQPIGAE 403
             |:|:.|.|..............|.|.:|...:.|                 .||:|.|:|....
  Rat   369 -EYSEQAQKWARYTDPVPTPRPGSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEEQVKPRLGR 432

  Fly   404 PLYHSKLEQFGRLALD-IINTKTEQVHVLFVAS-SGNHIKKLSVKYDGDGVQTCLVELWQA-DDT 465
            ||...|...|..:..| |:........|||:.: .|..:|.:|:     |....:||..|. |..
  Rat   433 PLLVKKNTNFTHVVADRILGLDGATYTVLFIGTGDGWLLKAVSL-----GPWIHMVEELQVFDQE 492

  Fly   466 GTSSLLNMAYLKVSDSLYLGTDLALTRIPAQHCSRHVSQSSCLNSMDPYCGWNELVERCMPQPQD 530
            ...||:.....||   |:.|:...|.::....|:::.....|:.:.||||.||....||:.....
  Rat   493 PVESLVLSQSKKV---LFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRCVATGGH 554

  Fly   531 SSVLQHWHQA---PQITC---------PVL--NAPIDGGWSTWSP-----------WAVCQQH-- 568
            |..|...|.|   |...|         ||:  |..:..|.....|           |....:.  
  Rat   555 SGSLLVQHVANLDPSKMCIQYAIKKARPVVPKNITVVAGTDLVLPCHLSSNLAHALWTFRGRDLP 619

  Fly   569 -EQP-----DSNCQCRQRSCNNPQPQHGGATCEGISTQVTNCTQHGGWTEWSAWS-PCSQTCGIA 626
             |||     |:..|......  .|.:|.|.         .:|......|:.:|.| ..|...|.:
  Rat   620 AEQPGSFLYDTGLQALVVMA--AQSRHSGP---------YHCYSEEQGTKLAAESYLVSVVAGSS 673

  Fly   627 VKIRRRTCGNPRPAFG---------GRTCV-------------------GSEQSE---MYCRHLP 660
            |.:..|.   |....|         |..|:                   ||:.:|   :|...||
  Rat   674 VTLEARA---PLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGSKAAERTLVYPLELP 735

  Fly   661 PCPVAK-----PQSVDGGWGPWG-EWSECS-------AQC--GGGFRMRRRECNDPAPLNGGMEC 710
            ..|.:.     |::.:..|.|.| .:|:.|       |:|  |||         .|:|..|   .
  Rat   736 KEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGG---------PPSPPPG---I 788

  Fly   711 PG 712
            ||
  Rat   789 PG 790

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 141/472 (30%)
PSI 497..546 CDD:279745 16/60 (27%)
TSP1 556..607 CDD:214559 11/69 (16%)
TSP1 610..663 CDD:214559 17/84 (20%)
TSP1 674..725 CDD:214559 15/49 (31%)
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
Sema4cXP_006244820.1 Sema_4C 64..520 CDD:200519 142/475 (30%)
PSI 521..>550 CDD:214655 10/28 (36%)
IG_like 585..659 CDD:214653 14/84 (17%)
Ig 586..670 CDD:299845 17/94 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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