Sequence 1: | NP_611293.3 | Gene: | Sema5c / 37066 | FlyBaseID: | FBgn0284221 | Length: | 1093 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006244820.1 | Gene: | Sema4c / 301346 | RGDID: | 1562837 | Length: | 856 | Species: | Rattus norvegicus |
Alignment Length: | 782 | Identity: | 209/782 - (26%) |
---|---|---|---|
Similarity: | 312/782 - (39%) | Gaps: | 168/782 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 53 ISYQDLMSTAKRFYDPETTWYSEMLFDVARNQVIVGARDTLYRMSFDLEPLER---ASWGATPSE 114
Fly 115 IAMCQAKGQSERW-CRNYVRVLHSYGENQLYACGTNAFQPSCSWRQMENLTV--TGVDSGVVKCP 176
Fly 177 FHPQANSTSLLQSNGQLFVGTATDFSGSDVAILRTGVESNKRFLRTKQYNNNWLSGAQFVGSF-- 239
Fly 240 --EAGHF------VYFLLRESAAEHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNC 296
Fly 297 SLPGEYPYYFDEIQ------GMTYAESESILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQ 355
Fly 356 QEHSDAAWKTVNTNQRSQFQCGTSSIGHWLESSRY-----------------QLMDEAVQPIGAE 403
Fly 404 PLYHSKLEQFGRLALD-IINTKTEQVHVLFVAS-SGNHIKKLSVKYDGDGVQTCLVELWQA-DDT 465
Fly 466 GTSSLLNMAYLKVSDSLYLGTDLALTRIPAQHCSRHVSQSSCLNSMDPYCGWNELVERCMPQPQD 530
Fly 531 SSVLQHWHQA---PQITC---------PVL--NAPIDGGWSTWSP-----------WAVCQQH-- 568
Fly 569 -EQP-----DSNCQCRQRSCNNPQPQHGGATCEGISTQVTNCTQHGGWTEWSAWS-PCSQTCGIA 626
Fly 627 VKIRRRTCGNPRPAFG---------GRTCV-------------------GSEQSE---MYCRHLP 660
Fly 661 PCPVAK-----PQSVDGGWGPWG-EWSECS-------AQC--GGGFRMRRRECNDPAPLNGGMEC 710
Fly 711 PG 712 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Sema5c | NP_611293.3 | Sema_5C | 65..496 | CDD:200526 | 141/472 (30%) |
PSI | 497..546 | CDD:279745 | 16/60 (27%) | ||
TSP1 | 556..607 | CDD:214559 | 11/69 (16%) | ||
TSP1 | 610..663 | CDD:214559 | 17/84 (20%) | ||
TSP1 | 674..725 | CDD:214559 | 15/49 (31%) | ||
TSP1 | 802..834 | CDD:214559 | |||
TSP1 | 853..901 | CDD:214559 | |||
TSP1 | 906..953 | CDD:214559 | |||
Sema4c | XP_006244820.1 | Sema_4C | 64..520 | CDD:200519 | 142/475 (30%) |
PSI | 521..>550 | CDD:214655 | 10/28 (36%) | ||
IG_like | 585..659 | CDD:214653 | 14/84 (17%) | ||
Ig | 586..670 | CDD:299845 | 17/94 (18%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3611 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |