DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and Sema6c

DIOPT Version :10

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:NP_059004.1 Gene:Sema6c / 29744 RGDID:3659 Length:960 Species:Rattus norvegicus


Alignment Length:912 Identity:244/912 - (26%)
Similarity:359/912 - (39%) Gaps:249/912 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LWLLLILSLLTLEGPQPSTGSGYTTKSSVDLLENDSRYISYQDLMSTAKRFYDPETTWY------ 73
            |.|||:|||     ||..|.   ..:..:.||.:        ||..|:      .::|:      
  Rat    10 LLLLLLLSL-----PQAQTA---FPQDPIPLLTS--------DLQGTS------PSSWFRGLEDD 52

  Fly    74 ---SEMLFDVAR-----NQVIVGARDTLYRMSFDLEPLERASWGATPS--------EIAMCQAKG 122
               :|:..|..|     ..::|.|||.::  ||||:..|... |..|:        ::..|..:|
  Rat    53 AVAAELGLDFQRFLTLNRTLLVAARDHVF--SFDLQAQEEGE-GLVPNKFLTWRSQDMENCAVRG 114

  Fly   123 QSERWCRNYVRVLHSYGENQLYACGTNAFQPSCSWRQMENLTVTGVD-SGVVKCPFHPQANSTSL 186
            :....|.||:|||..:....|.|||||:|.|.|....:.:|...|.: ||..:||| ....||..
  Rat   115 KLTDECYNYIRVLVPWDSQTLLACGTNSFSPVCRSYGITSLQQEGEELSGQARCPF-DATQSTVA 178

  Fly   187 LQSNGQLFVGTATDFSGSDVAILRT-GVESNKRFLRTKQYNNNWLSGAQFVGSFEAGHFVYFLLR 250
            :.:.|.|:..||.||..||..:.|: |.:..   ||:.:|::.||....||.:.|.|..|||..|
  Rat   179 ISAEGSLYSATAADFQASDAVVYRSLGPQPP---LRSAKYDSKWLREPHFVYALEHGDHVYFFFR 240

  Fly   251 ESAAEHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPGEYPYYFDEIQGMT-- 313
            |.:.|....|:|.:||||||||.|:||..:.|..:||||||.|||||:||:..:|||.:|.:|  
  Rat   241 EVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQSLTGP 305

  Fly   314 -YAESESILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQQEHSDAAWKTVNTNQRSQFQCG 377
             .....|.|:..|.|..:||.||||||:.|..|...|:|.||:|...|.||..|:.::....:.|
  Rat   306 VNLHGRSALFGVFTTQTNSIPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVSEDKVPSPRPG 370

  Fly   378 T-SSIG--HWLESSR------------YQLMDEAVQPIGAEPLY----HSKLEQFGRLALDIINT 423
            : :.:|  ....||:            :.|:|.||.|...:||.    .:.|.|   :|:|.:..
  Rat   371 SCAGVGAAALFSSSQDLPDDVLLFIKAHPLLDPAVPPATHQPLLTLTSRALLTQ---VAVDGMAG 432

  Fly   424 KTEQVHVLFVASS-GNHIKKLSVKYDGDGVQTCLVELWQADDTGTSS----------LLNMAYLK 477
            ......|||:.|: |..:|.|.......|.:..::|...|......|          ::.:....
  Rat   433 PHRNTTVLFLGSNDGTVLKVLPPGGQSLGPEPIILEEIDAYSHARCSGKRSPRAARRIIGLELDT 497

  Fly   478 VSDSLYLGTDLALTRIPAQHCSRH-VSQSSCLNSMDPYCGWNELVERCM----PQPQDSSV---- 533
            ....|::.....:..:....|:|| ..|.|||.|:||||||:.. ..|:    |...|..:    
  Rat   498 EGHRLFVAFPGCIVYLSLSRCARHGACQRSCLASLDPYCGWHRF-RGCVNIRGPGGTDVDLTGNQ 561

  Fly   534 --LQHW---------HQAPQITCPVLNAPIDGGWSTWSPWAVCQQHEQPDSNCQCRQRSCNNPQP 587
              ::|.         ...|..:..||..|   |.|..:|.:....|..|.|:..           
  Rat   562 ESMEHGDCQDGATGSQSGPGDSAYVLLGP---GPSPETPSSPSDAHPGPQSSTL----------- 612

  Fly   588 QHGGATCEGISTQVTNCTQHGGWTEWSAWSPCSQTCGIAVKI----------------------- 629
               ||..:|:...:               ||.|.:..|.:.:                       
  Rat   613 ---GAHTQGVRRDL---------------SPASASRSIPIPLLLACVAAAFALGASVSGLLVSCA 659

  Fly   630 -----RRR-----TCGNPRP--------AFGG--------RTCVGSEQSEMYCRHLPP------- 661
                 |||     |.|.|||        ..||        :....::..::|...|||       
  Rat   660 CRRANRRRSKDIETPGLPRPLSLRSLARLHGGGPEPPPPPKDGDAAQTPQLYTTFLPPPEGGSPP 724

  Fly   662 ---C---PVAKPQ----SVDGGWGPWGEWSE--------------CSAQCGGGFRMRRRECNDPA 702
               |   |...|:    .:....||| ||::              |||..|...|:..|   .|.
  Rat   725 ELACLPTPETTPELPVKHLRASGGPW-EWNQNGNNASEGPGRPRGCSAAGGPAPRVLVR---PPP 785

  Fly   703 PLNGGMECPGCRLDYEECNMQSCQE-VRKLSAWTPWLTVTGSGNSSEPHMERRFRFVCRATSPDP 766
            |     .|||     :|..:.:.:| :|.|....|      ....|||.....|      ||..|
  Rat   786 P-----GCPG-----QEVEVTTLEELLRYLHGPQP------PRKGSEPLASAPF------TSRPP 828

  Fly   767 SS 768
            :|
  Rat   829 AS 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 148/487 (30%)
PSI 497..546 CDD:396154 19/68 (28%)
TSP1 556..607 CDD:214559 8/50 (16%)
TSP1 610..663 CDD:214559 19/114 (17%)
TSP1 674..725 CDD:214559 17/64 (27%)
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
Sema6cNP_059004.1 Sema 52..516 CDD:472829 147/473 (31%)
PSI 517..>538 CDD:396154 12/20 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 555..624 14/100 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 685..725 6/39 (15%)
PHA03307 730..>956 CDD:223039 31/127 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 745..792 16/60 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 806..960 9/37 (24%)
Blue background indicates that the domain is not in the aligned region.

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