DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and Sema4b

DIOPT Version :10

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:NP_001163933.1 Gene:Sema4b / 293042 RGDID:1307872 Length:821 Species:Rattus norvegicus


Alignment Length:857 Identity:206/857 - (24%)
Similarity:316/857 - (36%) Gaps:248/857 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 MFSQLWLLLILSLLTLE---GPQPSTGSGYTTKSSVDLLENDSRYISYQDLMSTAKRFYDPETTW 72
            :.|.|.|||:|...|..   ||:.|..           |:::.|.|         ::|.....:.
  Rat    10 LLSALQLLLLLLRTTTARALGPRISVP-----------LDSEERLI---------RKFEAENISN 54

  Fly    73 YSEMLFDVARNQVIVGARDTLYRMSFDLEPL-----ERASWGATPSEIAMCQAKGQS-ERWCRNY 131
            |:.:|.......:.||||:.|:.::.:|..|     :...|.|.|.....|..||:. :|.|:||
  Rat    55 YTALLLSQDGKTLYVGAREALFALNSNLSFLPGGEYQELLWSADPDRKQQCSFKGKDPKRDCQNY 119

  Fly   132 VRVLHSYGENQLYACGTNAFQPSCSWRQMENLTVTGVDSGVV-------KCPFHPQANSTSLLQS 189
            :::|.....:.|..|||.||.|.|::....:.|:...::|.|       :|||.|...||:|: .
  Rat   120 IKILLPLNSSHLLTCGTAAFSPLCAYINTASFTLARDEAGSVLLEDGKGRCPFDPNFKSTALV-V 183

  Fly   190 NGQLFVGTATDFSGSDVAILRTGVESNKRFLRTKQYNNNWLSGAQFVGSFEAGHF---------- 244
            :|:|:.||.:.|.|:|.||.|:   .:.|..:|:. :.|||....||.|......          
  Rat   184 DGELYTGTVSSFQGNDPAISRS---QSPRPTKTES-SLNWLQDPAFVASAYVPESLGSPIGDDDK 244

  Fly   245 VYFLLRESAAEHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPGE-YPYYFDE 308
            :||...|:..|.......|.||||||||.| .||.::|:..|||||||:|.||.|.: :|  |:.
  Rat   245 IYFFFSETGQEFEFFENTIVSRVARVCKGD-EGGERVLQQRWTSFLKAQLLCSRPDDGFP--FNV 306

  Fly   309 IQGMTYAE------SESILYATFRTS--GSSIFGSAVCAYNLSSINAAFDGPFKQQEHSDAAWKT 365
            :|.:....      .:::.|..|.:.  ..:..|||:|.:.::.:..||||.:|:.......|.|
  Rat   307 LQDVFTLNPNPQDWRKTLFYGVFTSQWHRGTTEGSAICVFTMNDVQKAFDGLYKKVNRETQQWYT 371

  Fly   366 ----VNTNQRSQFQCGTSSIGHWLESSRYQLMDEA--------------------VQP------- 399
                |.|.:..  .|.|:|......:|..||.|..                    :||       
  Rat   372 ETHPVPTPRPG--ACITNSARERKINSSLQLPDRVLNFLKDHFLMDGQVRSRLLLLQPQARYQRV 434

  Fly   400 -IGAEPLYHSKLEQF------GRLALDIINTKTEQVHVLFVASSGNHIKKLSVKYDGDGVQTCLV 457
             :...|..||..:..      |||...:  |...:||:         |::|.|...|..||..|:
  Rat   435 AVHRVPGLHSTYDVLFLGTGDGRLHKAV--TLDSRVHI---------IEELQVFPQGQPVQNLLL 488

  Fly   458 ELWQADDTGTSSLLNMAYLKVSDSLYLGTDLALTRIPAQHCSRHVSQSSCLNSMDPYCGWNELVE 522
                 |..|             ..||..:...:.::|..:||.:.:...||.:.||||.||....
  Rat   489 -----DSHG-------------GLLYASSHSGVVQVPVANCSLYPTCGDCLLARDPYCAWNGSTC 535

  Fly   523 RCMPQPQDSSVLQHWHQ-----APQITCPVLNAPIDGGWSTWSPWAVCQQHEQPDSNCQCRQRSC 582
            :.:...|.....:.|.|     ..:..|.:.:|..    .::.|...|:|       .|.:..:.
  Rat   536 KLLSLYQPDLASRPWIQDIEGANTKELCNISSAKA----RSFKPGKPCKQ-------VQIQANTV 589

  Fly   583 NNPQPQHGGATCEGISTQVTNCTQHGGWTEWSAWSP--CSQTCGIAVKIRRRTCGNPRPAFGGRT 645
            |.       ..|..:|...|....|.|       :|  .|.:|.:.            |: |...
  Rat   590 NT-------LACPLLSNLATRLWLHNG-------APVNASASCRVL------------PS-GDLL 627

  Fly   646 CVGSEQS---------EMYCRHLPP--CPVAKPQSV----------------------DGGWGPW 677
            .|||:|.         |...|.|..  ||..|...|                      .||...|
  Rat   628 LVGSQQGLGVFQCWSIEEGFRQLVASYCPEVKEDGVMDQNDQSDGTPVIINTSRVSAPAGGRASW 692

  Fly   678 GE----WSECSAQC--------------------GGGFRMRRREC------NDPA-------PLN 705
            |.    |:|....|                    |....:::.||      ..||       |||
  Rat   693 GADKSYWNEFLVMCTLFGLAVVLLVLFFLYRNRDGMKLFLKQGECASVHPKTRPAVLPPETRPLN 757

  Fly   706 GGMECPGCRLDY 717
             |:..|...||:
  Rat   758 -GVGPPSTPLDH 768

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 133/500 (27%)
PSI 497..546 CDD:396154 13/53 (25%)
TSP1 556..607 CDD:214559 8/50 (16%)
TSP1 610..663 CDD:214559 12/65 (18%)
TSP1 674..725 CDD:214559 17/81 (21%)
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
Sema4bNP_001163933.1 Sema 46..509 CDD:472829 133/501 (27%)
PSI 510..556 CDD:396154 13/45 (29%)
Ig_Sema4B_like 577..661 CDD:409456 24/117 (21%)
Ig strand A 577..583 CDD:409456 2/12 (17%)
Ig strand B 587..595 CDD:409456 1/14 (7%)
Ig strand C 601..607 CDD:409456 1/5 (20%)
Ig strand C' 609..612 CDD:409456 1/9 (11%)
Ig strand D 618..622 CDD:409456 1/15 (7%)
Ig strand E 624..630 CDD:409456 1/5 (20%)
Ig strand F 636..645 CDD:409456 0/8 (0%)
Ig strand G 648..661 CDD:409456 5/12 (42%)
Blue background indicates that the domain is not in the aligned region.

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