DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and Sema3g

DIOPT Version :9

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:NP_001094352.1 Gene:Sema3g / 290562 RGDID:1306079 Length:780 Species:Rattus norvegicus


Alignment Length:573 Identity:154/573 - (26%)
Similarity:244/573 - (42%) Gaps:105/573 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 WLL--LILSLLTLEG---PQPSTGSGYTTKSSVDLLENDSRYISYQDLMSTAKR--FYDPETTWY 73
            |.:  |:.|||...|   |.|||        ||..|.     :||:||::|.:.  |..|..:..
  Rat     7 WAICCLLGSLLFHMGSPNPGPST--------SVPRLR-----LSYRDLLTTNRSAIFLGPRGSLD 58

  Fly    74 SEMLF-DVARNQVIVGARDTLYRMSFDL---EPLERASWGATPSEIAMCQAKGQSE-RWCRNYVR 133
            .:::: |..|:::.:|.||.||.:..|.   :|.| ..|...|.:...|..||:.. ..|.|:||
  Rat    59 LQVMYLDEYRDRLFLGGRDALYSLRLDQAWPDPRE-VLWPPQPGQKVECVRKGKDPLTECANFVR 122

  Fly   134 VLHSYGENQLYACGTNAFQPSCSW-------RQMENLTVTGVDSGVVKCPFHPQANSTSLLQSNG 191
            ||..:....|.||||.||||.|::       ..:.:|..:.:::|..:||..|.....|.. ..|
  Rat   123 VLQPHNRTHLLACGTGAFQPICTFITVGHRGEHVLHLDPSSIENGRGRCPHEPSRPFASTF-VGG 186

  Fly   192 QLFVGTATDFSGSDVAILRTGVESNKRFLRTKQYNNNWLSGAQFV-------GSFEAGHFVYFLL 249
            :|:.|...||.|.:..|.|:|  ..:..||:.. :.:.|...:||       .|......|||..
  Rat   187 ELYTGLTADFLGREAMIFRSG--GPRPALRSDS-DQSLLHDPRFVMAARIPDNSDRDDDKVYFFF 248

  Fly   250 RESA-AEHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPGE--YPYYFDEIQG 311
            .|:. :.....|.|..|||.|||.|| .||.::|.:.|::||||||.||:||.  ...:||:::.
  Rat   249 SETVPSPDGGPGHVTVSRVGRVCVND-AGGQRVLVNKWSTFLKARLVCSVPGPGGAETHFDQLED 312

  Fly   312 M----TYAESESILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQQEHSDAAWKTVNTNQRS 372
            :    ..|.....:||.|.|..:...|.|||.|::..|...|:|||   .|.|.          .
  Rat   313 VFLLWPKAGKNLEVYALFSTVSAVFRGFAVCVYHMVDIWEVFNGPF---AHRDG----------P 364

  Fly   373 QFQCG------------------TSSIGHWLESSRYQLMDEAVQPIGAEPLYHSKL--------- 410
            |.|.|                  |:..|....|:: ...||.:|.:...||....:         
  Rat   365 QHQWGPYGGKVPFPRPGVCPSKMTAQPGRPFGSTK-DYPDEVLQFVRGHPLMFQPVRPRRGRPVL 428

  Fly   411 ------EQFGRLALDIINTKTEQVHVLFVASSGNHIKKLSVKYDGDGV---QTCLVELWQADDTG 466
                  :|..::.:|.:..:.....|:|:.:....:.|: :...|.|:   :..::|..|.....
  Rat   429 VKTHLAQQLCQIVVDRVEAEDGTYDVIFLGTDSGSVLKI-IALQGSGLPEPEEVVLEELQVFKVP 492

  Fly   467 TSSLLNMAYLKVSDSLYLGTDLALTRIPAQHCSRHVSQ-SSCLNSMDPYCGWN 518
            | .:..|.......:||:|:.|.:.|:....|..:.|. :.|..:.||||.|:
  Rat   493 T-PITEMEISVKRQTLYVGSPLGVARLQLHQCETYGSACAECCLARDPYCAWD 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 128/492 (26%)
PSI 497..546 CDD:279745 8/23 (35%)
TSP1 556..607 CDD:214559
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
Sema3gNP_001094352.1 Sema 50..523 CDD:301699 128/494 (26%)
PSI 522..568 CDD:214655 8/23 (35%)
Ig_Semaphorin_classIII 591..676 CDD:143279
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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