DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema5c and Sema3g

DIOPT Version :10

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:NP_001094352.1 Gene:Sema3g / 290562 RGDID:1306079 Length:780 Species:Rattus norvegicus


Alignment Length:573 Identity:154/573 - (26%)
Similarity:244/573 - (42%) Gaps:105/573 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 WLL--LILSLLTLEG---PQPSTGSGYTTKSSVDLLENDSRYISYQDLMSTAKR--FYDPETTWY 73
            |.:  |:.|||...|   |.|||        ||..|.     :||:||::|.:.  |..|..:..
  Rat     7 WAICCLLGSLLFHMGSPNPGPST--------SVPRLR-----LSYRDLLTTNRSAIFLGPRGSLD 58

  Fly    74 SEMLF-DVARNQVIVGARDTLYRMSFDL---EPLERASWGATPSEIAMCQAKGQSE-RWCRNYVR 133
            .:::: |..|:::.:|.||.||.:..|.   :|.| ..|...|.:...|..||:.. ..|.|:||
  Rat    59 LQVMYLDEYRDRLFLGGRDALYSLRLDQAWPDPRE-VLWPPQPGQKVECVRKGKDPLTECANFVR 122

  Fly   134 VLHSYGENQLYACGTNAFQPSCSW-------RQMENLTVTGVDSGVVKCPFHPQANSTSLLQSNG 191
            ||..:....|.||||.||||.|::       ..:.:|..:.:::|..:||..|.....|.. ..|
  Rat   123 VLQPHNRTHLLACGTGAFQPICTFITVGHRGEHVLHLDPSSIENGRGRCPHEPSRPFASTF-VGG 186

  Fly   192 QLFVGTATDFSGSDVAILRTGVESNKRFLRTKQYNNNWLSGAQFV-------GSFEAGHFVYFLL 249
            :|:.|...||.|.:..|.|:|  ..:..||:.. :.:.|...:||       .|......|||..
  Rat   187 ELYTGLTADFLGREAMIFRSG--GPRPALRSDS-DQSLLHDPRFVMAARIPDNSDRDDDKVYFFF 248

  Fly   250 RESA-AEHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPGE--YPYYFDEIQG 311
            .|:. :.....|.|..|||.|||.|| .||.::|.:.|::||||||.||:||.  ...:||:::.
  Rat   249 SETVPSPDGGPGHVTVSRVGRVCVND-AGGQRVLVNKWSTFLKARLVCSVPGPGGAETHFDQLED 312

  Fly   312 M----TYAESESILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQQEHSDAAWKTVNTNQRS 372
            :    ..|.....:||.|.|..:...|.|||.|::..|...|:|||   .|.|.          .
  Rat   313 VFLLWPKAGKNLEVYALFSTVSAVFRGFAVCVYHMVDIWEVFNGPF---AHRDG----------P 364

  Fly   373 QFQCG------------------TSSIGHWLESSRYQLMDEAVQPIGAEPLYHSKL--------- 410
            |.|.|                  |:..|....|:: ...||.:|.:...||....:         
  Rat   365 QHQWGPYGGKVPFPRPGVCPSKMTAQPGRPFGSTK-DYPDEVLQFVRGHPLMFQPVRPRRGRPVL 428

  Fly   411 ------EQFGRLALDIINTKTEQVHVLFVASSGNHIKKLSVKYDGDGV---QTCLVELWQADDTG 466
                  :|..::.:|.:..:.....|:|:.:....:.|: :...|.|:   :..::|..|.....
  Rat   429 VKTHLAQQLCQIVVDRVEAEDGTYDVIFLGTDSGSVLKI-IALQGSGLPEPEEVVLEELQVFKVP 492

  Fly   467 TSSLLNMAYLKVSDSLYLGTDLALTRIPAQHCSRHVSQ-SSCLNSMDPYCGWN 518
            | .:..|.......:||:|:.|.:.|:....|..:.|. :.|..:.||||.|:
  Rat   493 T-PITEMEISVKRQTLYVGSPLGVARLQLHQCETYGSACAECCLARDPYCAWD 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 128/492 (26%)
PSI 497..546 CDD:396154 8/23 (35%)
TSP1 556..607 CDD:214559
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
Sema3gNP_001094352.1 Sema 50..523 CDD:472829 128/494 (26%)
PSI 522..568 CDD:214655 8/23 (35%)
Ig_Sema3 591..676 CDD:409455
Ig strand B 596..604 CDD:409455
Ig strand C 610..616 CDD:409455
Ig strand C' 618..621 CDD:409455
Ig strand D 631..635 CDD:409455
Ig strand E 638..645 CDD:409455
Ig strand F 651..660 CDD:409455
Ig strand G 663..676 CDD:409455
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.