DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and Sema4g

DIOPT Version :10

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:NP_036106.1 Gene:Sema4g / 26456 MGIID:1347047 Length:837 Species:Mus musculus


Alignment Length:579 Identity:160/579 - (27%)
Similarity:248/579 - (42%) Gaps:110/579 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 MFSQLWLLLILSLLTLEGPQPSTGSGYTTKSSVDLLENDSRYISYQDLMSTAKRFYDPETTWYSE 75
            |:.:||.||...|.....|.||     ..:.|.:|.......|||::|...  |.:..:|..||.
Mouse     1 MWGRLWPLLFSFLTVTAVPGPS-----LRRPSRELDATPRLTISYEELSQI--RHFKGQTQNYST 58

  Fly    76 MLFDVARNQVIVGARDTLYRMSF-DLEPL--ERASWGATPSEIAMCQAKGQSERW-CRNYVRVLH 136
            :|.:.|..:::||||..|:.:|. |:...  :...|.|:|...:.|..||::.:. |.|:||.|.
Mouse    59 LLLEEASERLLVGARGALFSLSARDIRDRTHKEIHWEASPEMQSKCHQKGKNNQTECFNHVRFLQ 123

  Fly   137 SYGENQLYACGTNAFQPSCSWRQMENLTV-TGVDSGVVKCPFHPQANSTSLLQSNGQLFVGTATD 200
            .......|||||:||||.|:....|...: |..:.|..|||:.|....|.|: .:|.|:..|..:
Mouse   124 RLNATHFYACGTHAFQPLCAAIDAETFILPTSFEEGKEKCPYDPARGFTGLI-IDGGLYTATRYE 187

  Fly   201 F-SGSDVAILRTGVESNKRFLRTKQYNNNWLSGAQF-------------VGSFEAGHFVYFLLRE 251
            | |..|:...|     :...|||::...:||:.|:|             ||..:..:| :|:.||
Mouse   188 FRSIPDIRRSR-----HPHSLRTEEAPMHWLNDAEFVFSVLVRESKTSAVGDDDKIYF-FFMERE 246

  Fly   252 SAAEHMSCGKVIY--SRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPGEYPYYFDEIQGM-- 312
            ..:...:..:..:  :|||||||.|: ||.::|:..|||||||||.|.:|     .::.::|:  
Mouse   247 EGSSSFTQSRSSHRVARVARVCKGDL-GGKKILQKKWTSFLKARLICHIP-----QYETLRGVCS 305

  Fly   313 --TYAESESILYATF--RTSGSSIFGSAVCAYNLSSINAAFDGPFKQQEHSDAAWKTVNTNQRSQ 373
              ....|.:..||.|  .|...::..||:|.|:|:.|.|.|.|||.:.:.....|        .:
Mouse   306 LNADTSSHTHFYAVFTLTTQWKTLEASAICRYDLAEIQAVFTGPFMEYQDGARRW--------GR 362

  Fly   374 FQCGT------SSIGHWLESSRYQ-----------------LMDEAVQPIGAEPLYHSKLEQFGR 415
            ::.|.      |.|...|.|..|.                 ||...|.|....||...:..::..
Mouse   363 YEGGVPEPRPGSCITDSLRSRGYNSSQDLPSLVLDFVKLHPLMARPVVPTRGRPLLLKRNVRYTH 427

  Fly   416 LA-------------LDIINTKTEQVHVLFVASSGNH-IKKLSVKYDGDGVQTCLVELWQADDTG 466
            |.             |..:.|....:|...|..||.| |:::.|..:...|.             
Mouse   428 LTGTHVSTPAGPTYDLLFLGTADGWIHKAVVLGSGMHIIEEIQVFREPQSVD------------- 479

  Fly   467 TSSLLNMAYLKVSDSLYLGTDLALTRIPAQHCSRHVSQSSCLNSMDPYCGWNELVERCM 525
                 |:....:..|||:|....:.:.|...|||:.|...|:.:.||||||:..:..||
Mouse   480 -----NLVISPMQHSLYVGAASGVLQFPLSSCSRYQSCYDCILARDPYCGWDSSIHACM 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 131/494 (27%)
PSI 497..546 CDD:396154 13/29 (45%)
TSP1 556..607 CDD:214559
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
Sema4gNP_036106.1 Sema 47..504 CDD:472829 132/495 (27%)
PSI 505..555 CDD:396154 13/29 (45%)
Ig_Sema4B_like 565..648 CDD:409456
Ig strand A 565..571 CDD:409456
Ig strand B 575..583 CDD:409456
Ig strand C 589..595 CDD:409456
Ig strand C' 597..600 CDD:409456
Ig strand D 607..611 CDD:409456
Ig strand E 613..620 CDD:409456
Ig strand F 626..635 CDD:409456
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 721..776
Blue background indicates that the domain is not in the aligned region.

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