DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and Adgrb2

DIOPT Version :10

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:XP_011238809.1 Gene:Adgrb2 / 230775 MGIID:2451244 Length:1582 Species:Mus musculus


Alignment Length:767 Identity:165/767 - (21%)
Similarity:236/767 - (30%) Gaps:264/767 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   306 FDEIQGMTYAESESILYATFRTSGSSIFGSAV--CAYNLSSINAAFDGPFKQQEHSDAAWKTVNT 368
            ||.......|.:..:||..|  |...:|.:..  |::.|              |:.|....::..
Mouse    21 FDPAPSACSALASGVLYGAF--SLQDLFPTIASGCSWTL--------------ENPDPTKYSLYL 69

  Fly   369 NQRSQFQCGTSSIGHWLESSRYQLMDEAVQPIGAEPLYHSKLEQFGRLALDIINTKTEQVHVLFV 433
            ....|.|..|......|....|.:....::| |.|       |...|...::...:.|:......
Mouse    70 RFNRQEQVCTHFAPRLLPLDHYLVNFTCLRP-GPE-------EATARAESEVGRPEEEEEEAAAA 126

  Fly   434 ASS----GNHIKKLSVKYDGDGVQTCLVELWQADDTGTSSLLNMAYLKVSDSLYLGTDLALTRIP 494
            ||.    |.......:.:|.:.||.||    .|:.:....||..|.|     .:...::.|..  
Mouse   127 ASGLELCGGSGPFTFLHFDKNFVQLCL----SAEPSEAPRLLAPAAL-----AFRFVEVLLIN-- 180

  Fly   495 AQHCSRHVSQSSCLNSMDPYCGWNELVERC-------------MPQPQDSSVLQHWHQAPQITCP 546
                :.:.||.:|    ...|.|:|...|.             .|....::........|.:...
Mouse   181 ----NNNSSQFTC----GVLCRWSEECGRAAGRACGFAQPGCSCPGEAGANPATTTSPGPPVAHT 237

  Fly   547 VLNAPIDGGWSTWSPWAVCQQH---------------EQPDSNCQCR---QRSCNNP---QPQHG 590
            :.||.:.||   .:|.|....|               |:|:...:.:   .||.:.|   ..|.|
Mouse   238 LSNALVPGG---PAPPAEADLHSGSSNDLFTTEMRYGEEPEEEPKVKTQWPRSADEPGLYMAQTG 299

  Fly   591 GATCEGISTQVTNCTQHGGWTEWSAWSPCSQTCGIAVKIRRRTC-GNPRPAFGGRTCVGSEQSEM 654
            ....|                |||.||.||.|||..:::|.|:| .:|.    |..|.|..:...
Mouse   300 DPAAE----------------EWSPWSVCSLTCGQGLQVRTRSCVSSPY----GTLCSGPLRETR 344

  Fly   655 YCRHLPPCPVAKPQSVDGGWGPWGEWSECSAQCGGGFRMRRRECNDPAPLNGGMECPGCRLDYEE 719
            .|.:...||      |.|.|..||.||.||..||.|.|.|.|.|  ..|.:||..|.|..|..:.
Mouse   345 PCNNSATCP------VHGVWEEWGSWSLCSRSCGRGSRSRMRTC--VPPQHGGKACEGPELQTKL 401

  Fly   720 CNMQSCQEVRKLSAWTPWLTVTGSGNSSEPHMERRFRFVCRATSPDPSSVRIGLPKEESRNCHAD 784
            |:|.:|....:...|.|                                                
Mouse   402 CSMAACPVEGQWLEWGP------------------------------------------------ 418

  Fly   785 GSCQRQVDHDSADSDAADWSPCSVSCGGGVQQRHR-------------GRGSQSRVCNIHACPAE 836
                              |.|||.||..|.|||.|             |..:.:|.|:...|||.
Mouse   419 ------------------WGPCSSSCANGTQQRSRKCSVAGPAWATCAGALTDTRECSNLDCPAT 465

  Fly   837 EQLSSNSLDNELEHGEWGCWSEWSACSVTCGLGLRRRTRRCLA----GHDRLCQGRALEEQKCEM 897
            :             |:||.|:.||.||.||..|.:||.|.|.|    |:.  |:|...|.:.|..
Mouse   466 D-------------GKWGPWNAWSLCSKTCDTGWQRRFRMCQASGTQGYP--CEGTGEEVKPCSE 515

  Fly   898 VPC--------EDFLGWSAWSE-------WSSCSSDGIRLRHRRCLVEQPGSMECRGAEFEKTAC 947
            ..|        ::::....|..       ::.|..:......||||:...|              
Mouse   516 KRCPAFHEMCRDEYVMLMTWKRAAAGEIIYNKCPPNASGSASRRCLLSAQG-------------- 566

  Fly   948 VPNECEETQTASTATLPIVIFVGLLFTVACCLATYRFTKKRFMLSAEEALNK 999
                              |.:.||.....|....||:    ..||..|.|.|
Mouse   567 ------------------VAYWGLPSFARCISHEYRY----LYLSLREHLAK 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 37/195 (19%)
PSI 497..546 CDD:396154 9/61 (15%)
TSP1 556..607 CDD:214559 11/71 (15%)
TSP1 610..663 CDD:214559 18/53 (34%)
TSP1 674..725 CDD:214559 22/50 (44%)
TSP1 802..834 CDD:214559 14/44 (32%)
TSP1 853..901 CDD:214559 21/59 (36%)
TSP1 906..953 CDD:214559 7/53 (13%)
Adgrb2XP_011238809.1 AGRB_N 26..221 CDD:465991 43/237 (18%)
TSP1 305..353 CDD:214559 18/51 (35%)
TSP1 358..408 CDD:214559 22/51 (43%)
TSP1 413..463 CDD:214559 16/115 (14%)
TSP1 469..519 CDD:214559 20/51 (39%)
HormR 522..586 CDD:214468 13/99 (13%)
GAIN 605..>760 CDD:465137
GPS 864..917 CDD:197639
7tmB2_BAI2 923..1234 CDD:320654
TM helix 1 925..950 CDD:320654
TM helix 2 960..982 CDD:320654
TM helix 3 991..1019 CDD:320654
TM helix 4 1029..1049 CDD:320654
TM helix 5 1067..1096 CDD:320654
TM helix 6 1143..1191 CDD:320654
TM helix 7 1196..1221 CDD:320654
Blue background indicates that the domain is not in the aligned region.

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