DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and SEMA3D

DIOPT Version :10

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:NP_689967.2 Gene:SEMA3D / 223117 HGNCID:10726 Length:777 Species:Homo sapiens


Alignment Length:566 Identity:168/566 - (29%)
Similarity:273/566 - (48%) Gaps:97/566 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LLLILSLLTLEGPQPSTGSGYTTKSSVDLLENDSRYISYQDLM---STAKRFYDPETTWYSEMLF 78
            ::|.:::|.|    |.||   |.|.::..|:     ::|:||:   |........|...:..:|.
Human    23 MMLSMTMLFL----PVTG---TLKQNIPRLK-----LTYKDLLLSNSCIPFLGSSEGLDFQTLLL 75

  Fly    79 DVARNQVIVGARDTLYRMSF-DL-EPLERASWGATPSEIAMCQAKGQ-SERWCRNYVRVLHSYGE 140
            |..|.::::||:|.::.:|. || :..::..|.|....:.:|:..|: :...|.|::|||..|.:
Human    76 DEERGRLLLGAKDHIFLLSLVDLNKNFKKIYWPAAKERVELCKLAGKDANTECANFIRVLQPYNK 140

  Fly   141 NQLYACGTNAFQPSCSWRQME--------NLTVTGVDSGVVKCPFHPQANSTSLLQSNGQLFVGT 197
            ..:|.|||.||.|.|.:..:.        .|....::||.:||||.||....|:: ::..|:.||
Human   141 THIYVCGTGAFHPICGYIDLGVYKEDIIFKLDTHNLESGRLKCPFDPQQPFASVM-TDEYLYSGT 204

  Fly   198 ATDFSGSDVAILRT-GVESNKRFLRTKQYNNNWLSGAQFVGSFEAGHF-----------VYFLLR 250
            |:||.|.|.|..|: |...:..::||....:.||:||:|:|:|    |           :||..|
Human   205 ASDFLGKDTAFTRSLGPTHDHHYIRTDISEHYWLNGAKFIGTF----FIPDTYNPDDDKIYFFFR 265

  Fly   251 ESAAEHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPGE--YPYYFDEIQGM- 312
            ||:.|..:..|.|.|||.|||||||||...|: :.||:||||||.||:||.  ...||||:|.: 
Human   266 ESSQEGSTSDKTILSRVGRVCKNDVGGQRSLI-NKWTTFLKARLICSIPGSDGADTYFDELQDIY 329

  Fly   313 ---TYAESESILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQQEHSDAAWKTVNTNQRSQF 374
               |..|...::|..|.|:.|...|||||.|:::.|.|.|:||:..:|.:|..|  |..:.|..:
Human   330 LLPTRDERNPVVYGVFTTTSSIFKGSAVCVYSMADIRAVFNGPYAHKESADHRW--VQYDGRIPY 392

  Fly   375 ----QCGTSSIGHWLESS------------RYQLMDEAVQPIGAEPLYHSKLEQFGRLALDIINT 423
                .|.:.:....::|:            |:.:|.::|.|:...|       .|.|:.:|...|
Human   393 PRPGTCPSKTYDPLIKSTRDFPDDVISFIKRHSVMYKSVYPVAGGP-------TFKRINVDYRLT 450

  Fly   424 KTEQVHVLFVASSGNHIKKLSVKYDGDGVQTCL------VELWQADDT---------GTSSLLNM 473
            :....||  :|..|.:    .|.:.|..:.|.|      .|.|..::.         .:|.:|||
Human   451 QIVVDHV--IAEDGQY----DVMFLGTDIGTVLKVVSISKEKWNMEEVVLEELQIFKHSSIILNM 509

  Fly   474 AYLKVSDSLYLGTDLALTRIPAQHCSRH-VSQSSCLNSMDPYCGWN 518
            ........||:|:...|.::....|..: .:.:.|..:.||||.|:
Human   510 ELSLKQQQLYIGSRDGLVQLSLHRCDTYGKACADCCLARDPYCAWD 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 148/490 (30%)
PSI 497..546 CDD:396154 7/23 (30%)
TSP1 556..607 CDD:214559
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
SEMA3DNP_689967.2 Sema_3D 61..534 CDD:200513 148/493 (30%)
PSI 533..570 CDD:214655 7/23 (30%)
Ig_Sema3 595..686 CDD:409455
Ig strand A 595..601 CDD:409455
Ig strand B 606..614 CDD:409455
Ig strand C 620..626 CDD:409455
Ig strand C' 628..631 CDD:409455
Ig strand D 641..645 CDD:409455
Ig strand E 648..655 CDD:409455
Ig strand F 661..670 CDD:409455
Ig strand G 673..686 CDD:409455
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 738..777
Blue background indicates that the domain is not in the aligned region.

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