DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and Sema7a

DIOPT Version :10

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:NP_035482.1 Gene:Sema7a / 20361 MGIID:1306826 Length:664 Species:Mus musculus


Alignment Length:667 Identity:153/667 - (22%)
Similarity:247/667 - (37%) Gaps:120/667 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ILKLPKMFS---QLWLLLI--LSLLTLEGPQ---PSTGSGYTTKSSVDLLENDSRYISYQDLMST 61
            :|.||..|.   :|.|||:  ::..:.:|..   |...:.:..:..||                 
Mouse    18 VLSLPARFGLPLRLRLLLVFWVAAASAQGHSRSGPRISAVWKGQDHVD----------------- 65

  Fly    62 AKRFYDPETTWYSEMLFDVARNQVIVGARDTLYRMSFDLEPLERASWGATPSEIAMCQAKGQSER 126
               |..||.  ::.:..:.....|.||.|..:|..:|.    |..:.......|...:...|.::
Mouse    66 ---FSQPEP--HTVLFHEPGSFSVWVGGRGKVYHFNFP----EGKNASVRTVNIGSTKGSCQDKQ 121

  Fly   127 WCRNYVRVLHSYGENQLYACGTNAFQPSCSWRQMENLTVTGVDSGVVKCPFHPQANSTSLLQSNG 191
            .|.||:.:|...| |.|..|||||.:||| |..:.:..|..:.......||.|..||..|.:.:.
Mouse   122 DCGNYITLLERRG-NGLLVCGTNARKPSC-WNLVNDSVVMSLGEMKGYAPFSPDENSLVLFEGDE 184

  Fly   192 QLFVGTATDFSGSDVAILRTGVESNKRFLRTKQYNNNWLSGAQFVGSFEA-GHFVYFLLRESAAE 255
            ........:::|......|...||......|...|..::. |..|...:| ...:|:..||...:
Mouse   185 VYSTIRKQEYNGKIPRFRRIRGESELYTSDTVMQNPQFIK-ATIVHQDQAYDDKIYYFFREDNPD 248

  Fly   256 HMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPGEYPYYFDEIQGMTYAESESI 320
            ......:..||||::|:.|.||...|....|.:||||.|.|| .......|:.:|.:......|.
Mouse   249 KNPEAPLNVSRVAQLCRGDQGGESSLSVSKWNTFLKAMLVCS-DAATNRNFNRLQDVFLLPDPSG 312

  Fly   321 LYATFRTSGSSIFG-----SAVCAYNLSSINAAFDGPFKQQEHSDAAWKTVNTNQRSQFQCGTSS 380
            .:...|..|  :|.     ||||.|:|..|:..|                 .|:....:..|..:
Mouse   313 QWRDTRVYG--VFSNPWNYSAVCVYSLGDIDRVF-----------------RTSSLKGYHMGLPN 358

  Fly   381 --IGHWLESSR------YQLMD------EAVQPIG--AEPLYHSKLEQFGRLALDIINTKTEQVH 429
              .|..|...:      :|:.|      :.|:|:|  ..||:|||......:...:..:..|..|
Mouse   359 PRPGMCLPKKQPIPTETFQVADSHPEVAQRVEPMGPLKTPLFHSKYHYQKVVVHRMQASNGETFH 423

  Fly   430 VLFVASSGNHIKKLSVKYDGDGVQTCLVELWQADDTGTSSLLNMAYLKVS-DSLYLGTDLALTRI 493
            ||::.:....|.|  |...||...:.:..:.:......::.:....|... ..||:.:...::::
Mouse   424 VLYLTTDRGTIHK--VVESGDQDHSFVFNIMEIQPFHRAAAIQAISLDADRRKLYVTSQWEVSQV 486

  Fly   494 PAQHCSRHVSQ-SSCLNSMDPYCGWNELVERCMP-QPQDSSVLQHWHQA-PQITCP--------- 546
            |...|..:... ..||.|.||||||::  :||:. .....||||..:.| |...||         
Mouse   487 PLDMCEVYSGGCHGCLMSRDPYCGWDQ--DRCVSIYSSQRSVLQSINPAEPHRECPNPKPDEAPL 549

  Fly   547 -----------VLNAPIDGGWSTWSPWAVCQQHEQPDSNCQ--CRQRSC-----NNPQPQHGGAT 593
                       .|..|::...:|:. |   :..|..:.:|:  .:..||     |....|:|...
Mouse   550 QKVSLARNSRYYLTCPMESRHATYL-W---RHEENVEQSCEPGHQSPSCILFIENLTARQYGHYR 610

  Fly   594 CEGISTQVTNCTQHGGW 610
            ||..........||  |
Mouse   611 CEAQEGSYLREAQH--W 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 105/453 (23%)
PSI 497..546 CDD:396154 18/51 (35%)
TSP1 556..607 CDD:214559 11/57 (19%)
TSP1 610..663 CDD:214559 1/1 (100%)
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
Sema7aNP_035482.1 Sema_7A 70..489 CDD:200504 103/449 (23%)
Cell attachment site. /evidence=ECO:0000255 265..267 0/1 (0%)
Interaction with integrins. /evidence=ECO:0000250 265..267 0/1 (0%)
PSI 491..540 CDD:396154 18/50 (36%)
Ig 547..617 CDD:472250 13/73 (18%)
Ig strand B 560..564 CDD:409353 1/3 (33%)
Ig strand C 572..576 CDD:409353 2/7 (29%)
Ig strand E 594..598 CDD:409353 1/3 (33%)
Ig strand F 608..613 CDD:409353 1/4 (25%)
Blue background indicates that the domain is not in the aligned region.

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