DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and Sema4a

DIOPT Version :9

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:XP_006501250.1 Gene:Sema4a / 20351 MGIID:107560 Length:798 Species:Mus musculus


Alignment Length:604 Identity:169/604 - (27%)
Similarity:272/604 - (45%) Gaps:103/604 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LILKLPKMFSQLWLLLILSLLTL--------------EGPQP----STGSGYTTKSSVDLLENDS 50
            |.:.||.:....|.||.:....|              :||.|    ..|.|:             
Mouse    37 LTMALPSLGQDSWSLLRVFFFQLFLLPSLPPASGTGGQGPMPRVKYHAGDGH------------- 88

  Fly    51 RYISYQDLMSTAKRFYDPETTWYSEMLFDVARNQVIVGARDTLYRMSFDLEPLERAS----WGAT 111
            |.:|:         |.......:..:|.....|.:.||||:.:..::.....:.|..    |.|:
Mouse    89 RALSF---------FQQKGLRDFDTLLLSDDGNTLYVGAREAVLALNIQNPGIPRLKNMIPWPAS 144

  Fly   112 PSEIAMCQAKGQS-ERWCRNYVRVLHSYGENQLYACGTNAFQPSCSWRQMEN-----LTVTGVDS 170
            ..:...|..|.:| |..|.|::|||.||....||||||.||.|:|::.::::     :.:..|..
Mouse   145 ERKKTECAFKKKSNETQCFNFIRVLVSYNATHLYACGTFAFSPACTFIELQDSLLLPILIDKVMD 209

  Fly   171 GVVKCPFHPQANSTSLLQSNGQLFVGTATDFSGSDVAILRT----GVESNKRFLRTKQYNNNWL- 230
            |..:.||.|....|::| .:|.|:.||..:|.||:..::||    .|.....|||       || 
Mouse   210 GKGQSPFDPVHKHTAVL-VDGMLYSGTMNNFLGSEPILMRTLGSQPVLKTDIFLR-------WLH 266

  Fly   231 SGAQFVGSFEAGHFVYFLLRESAAEHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLN 295
            :.|.||.:..:...|||...|:|:|.....::..||||:|||||| ||.:||:..||:||||:|.
Mouse   267 ADASFVAAIPSTQVVYFFFEETASEFDFFEELYISRVAQVCKNDV-GGEKLLQKKWTTFLKAQLL 330

  Fly   296 CSLPGEYPYYFDEIQGMTYAESESI--LYATFRTSGSSIFG---SAVCAYNLSSINAAFDGPFKQ 355
            |:.||:.|:.......:..|:|.|:  :||.| ||...:.|   |||||::|:.|...|.|.:|:
Mouse   331 CAQPGQLPFNIIRHAVLLPADSPSVSRIYAVF-TSQWQVGGTRSSAVCAFSLTDIERVFKGKYKE 394

  Fly   356 QEHSDAAWKTVNTNQRSQFQCGTSSIGHWLESS-----RYQLMDEAVQPIGAEPLYHSKLEQFGR 415
            .....:.|.|...::.|. :.|:.|:|...:.:     .:.||||.|  :|...|..|.:| :.|
Mouse   395 LNKETSRWTTYRGSEVSP-RPGSCSMGPSSDKALTFMKDHFLMDEHV--VGTPLLVKSGVE-YTR 455

  Fly   416 LALDIINTKTEQVH-VLFVASSGNHIKKLSVKYDGDGVQTCLVELWQADDTGTSSLLNMAYLKVS 479
            ||::.........| |:::.:|...:.|..|..|....   |||..|. ...:..:.|:......
Mouse   456 LAVESARGLDGSSHVVMYLGTSTGSLHKAVVPQDSSAY---LVEEIQL-SPDSEPVRNLQLAPAQ 516

  Fly   480 DSLYLGTDLALTRIPAQHCSRHVSQSSCLNSMDPYCGWNELVERCMPQPQDSSVL----QHWHQ- 539
            .:::.|....:.|:|..:||.:.|...|:.:.||:|.|:       |:.:..|:|    :.|.| 
Mouse   517 GAVFAGFSGGIWRVPRANCSVYESCVDCVLARDPHCAWD-------PESRLCSLLSGSTKPWKQD 574

  Fly   540 ----APQITC---PVLNAP 551
                .|:..|   |:..:|
Mouse   575 MERGNPEWVCTRGPMARSP 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 138/456 (30%)
PSI 497..546 CDD:279745 15/60 (25%)
TSP1 556..607 CDD:214559
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
Sema4aXP_006501250.1 Sema 93..533 CDD:387663 138/466 (30%)
PSI 534..578 CDD:214655 13/50 (26%)
Ig 603..675 CDD:386229
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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