DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and Sema3b

DIOPT Version :9

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:NP_001036244.1 Gene:Sema3b / 20347 MGIID:107561 Length:749 Species:Mus musculus


Alignment Length:869 Identity:210/869 - (24%)
Similarity:337/869 - (38%) Gaps:251/869 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 ISYQDLMST--AKRFYDPETTWYSEMLFDVARNQVIVGARDTLYRMSFD--LEPLERASWGATPS 113
            :|:|:|.:.  .:.|....|..|..:|.|..|.::.|||.:.:..:|.|  .:..::.:|.|...
Mouse    33 LSFQELQARHGVRTFRLERTCCYEALLVDEERGRLFVGAENHVASLSLDNISKRAKKLAWPAPVE 97

  Fly   114 EIAMCQAKGQ---SERWCRNYVRVLHSYGENQLYACGTNAFQPSCSW--------RQMENLTVTG 167
            ....|...|:   :|  |.|:|::||:|....|.||||.||.|:|::        ..|..|....
Mouse    98 WREECNWAGKDIGTE--CMNFVKLLHTYNHTHLLACGTGAFHPTCAFVEVGHRLEEPMLQLDRRK 160

  Fly   168 VDSGVVKCPFHPQANSTSLLQSNGQLFVGTATDFSGSDVAILRTGVESNKRFLRTKQYNNNWLSG 232
            ::.|..|.|:.|:..:.|:|... :|:.|...|..|.|..|.|:..::..  |||:.:::.||:.
Mouse   161 LEDGKGKTPYDPRHRAASVLVGE-ELYSGVTADLMGRDFTIFRSLGQNPS--LRTEPHDSRWLNE 222

  Fly   233 AQFVGSF---EAGH----FVYFLLRESAAEHM-SCGKVIYSRVARVCKNDVGGGGQLLRDNWTSF 289
            .:||..|   |:.:    .:||..||||.|.. :.|::..|||.::|:||:||...|: :.||:|
Mouse   223 PKFVKVFWIPESENPDDDKIYFFFRESAVEAAPAMGRMSVSRVGQICRNDLGGQRSLV-NKWTTF 286

  Fly   290 LKARLNCSLPG-EYPYYFDEIQGMTYAESES----ILYATFRTSGSSIFGSAVCAYNLSSINAAF 349
            |||||.||:|| |...:||::|.:....|..    :|||.|.||.....|||||.|:::.:..||
Mouse   287 LKARLVCSVPGVEGDTHFDQLQDVFLLSSRDRQTPLLYAVFSTSSGVFQGSAVCVYSMNDVRRAF 351

  Fly   350 DGPFKQQEHSDAAWKTVNTNQRSQF----QCGTSSIGHWLESSRYQLMDEAVQ------------ 398
            .|||..:|.....|  |:...|..:    .|.:.:.|.:  ||.....|:.:|            
Mouse   352 LGPFAHKEGPTHQW--VSYQGRVPYPRPGMCPSKTFGTF--SSTKDFPDDVIQFARNHPLMYNPV 412

  Fly   399 -PIGAEPLYHSKLE-----QFGRLALDIINTKTEQVHVLFVASS-GNHIKKLSV----KYDGDGV 452
             |:|..||:   |:     .|.::|.|.:........|||:.:. |..:|.:||    :.:.:|:
Mouse   413 LPMGGRPLF---LQVGAGYTFTQIAADRVAAADGHYDVLFIGTDVGTVLKVISVPKGSRPNSEGL 474

  Fly   453 QTCLVELWQADDTGTSSLLNMAYLKVSDSLYLGTDLALTRIPAQHCS---RHVSQSSCLNSMDPY 514
              .|.||...:|  ::::.:|........||:.:..|:.:|....|:   |..::  |..:.|||
Mouse   475 --LLEELQVFED--SAAITSMQISSKRQQLYIASRSAVAQIALHRCTALGRACAE--CCLARDPY 533

  Fly   515 CGWNELVERCMPQPQDSSVLQHWHQAPQITCPVLNAPIDGGWSTWSPWAVCQQHEQPDSNCQCRQ 579
            |.|                                   ||        :.|.:. ||.:..:.|:
Mouse   534 CAW-----------------------------------DG--------SACTRF-QPTAKRRFRR 554

  Fly   580 RSCNNPQP---------------------QHGGA--TCEGISTQVTNCTQHGGWTEWSAWSPCSQ 621
            :...|..|                     :.|.|  .||..|.|.     |..||...| ...:.
Mouse   555 QDIRNGDPSTLCSGDSSHSVLLEKKVLGVESGSAFLECEPRSLQA-----HVQWTFQGA-GEAAH 613

  Fly   622 TCGIAVKIRRRTC------GNPRPAFGGRTCVGSEQS-EMYCRHLPPCPVAKPQSVDGGWGPWGE 679
            |..:|.:...||.      |..|...|...||..||. ....|.|....::..|:.         
Mouse   614 TQVLAEERVERTARGLLLRGLRRQDSGVYLCVAVEQGFSQPLRRLVLHVLSAAQAE--------- 669

  Fly   680 WSECSAQCGGGFRM-RRRECNDPAPLNGGMECPGCRLDYEECNMQSCQEVRKLSAWTPWLTVTGS 743
                        |: |..|...|||       ||.:|.|.:. :|              |...|.
Mouse   670 ------------RLARAEEAAAPAP-------PGPKLWYRDF-LQ--------------LVEPGG 700

  Fly   744 GNSSEPHMERRFRFVCRATSPDPSSVRIGLPKEESRNCHADGSCQRQVDHDSADSDAADWSPCSV 808
            |..:                   :|:|:               |:.|..|.|..:|:        
Mouse   701 GGGA-------------------NSLRM---------------CRPQPGHHSVAADS-------- 723

  Fly   809 SCGGGVQQRHRGRGSQSRVCNIHA 832
                    |.:||..:..|..:.|
Mouse   724 --------RRKGRNRRMHVSELRA 739

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 141/483 (29%)
PSI 497..546 CDD:279745 8/51 (16%)
TSP1 556..607 CDD:214559 12/73 (16%)
TSP1 610..663 CDD:214559 16/59 (27%)
TSP1 674..725 CDD:214559 11/51 (22%)
TSP1 802..834 CDD:214559 5/31 (16%)
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
Sema3bNP_001036244.1 Sema 46..516 CDD:417757 141/486 (29%)
PSI 515..>551 CDD:214655 13/81 (16%)
Ig 575..665 CDD:416386 23/95 (24%)
Ig strand A 575..580 CDD:409353 0/4 (0%)
Ig strand B 585..593 CDD:409353 2/7 (29%)
Ig strand C 599..605 CDD:409353 2/10 (20%)
Ig strand C' 607..610 CDD:409353 1/3 (33%)
Ig strand D 620..624 CDD:409353 0/3 (0%)
Ig strand E 627..634 CDD:409353 0/6 (0%)
Ig strand F 640..649 CDD:409353 3/8 (38%)
Ig strand G 652..665 CDD:409353 2/12 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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