DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and smp-1

DIOPT Version :9

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:NP_001379344.1 Gene:smp-1 / 173351 WormBaseID:WBGene00004889 Length:714 Species:Caenorhabditis elegans


Alignment Length:482 Identity:149/482 - (30%)
Similarity:234/482 - (48%) Gaps:59/482 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 NQVIVGARDTLYRMSFD-LEPLERASWGATPSEIAMCQAKGQSERWCRNYVRVLHSYGENQLYAC 146
            :.::||||:.:|.:|.. |....:..|......|..|..||:|:..|:||:|||..........|
 Worm    63 DSLLVGARNAVYNLSLSTLSVNHKIDWKPPAEHIEECIMKGKSKTDCQNYIRVLARKSAGVSLVC 127

  Fly   147 GTNAFQPSCSWRQMENLTVT--GVDS-----GVVKCPFHPQANSTSL-LQSNGQLFVGTATDFSG 203
            ||:||.|.|     ...|||  |:.:     |....|:.|:.||::| :....||||.|.|||.|
 Worm   128 GTHAFSPKC-----REYTVTEFGIRNTRQFDGQGISPYDPKHNSSALYVPGTNQLFVATVTDFVG 187

  Fly   204 SDVAILRTGVE---SNKRF--LRTKQYNNNWLSGAQFVGSFEAGHFVYFLLRESAAEHMSCGK-- 261
            :|..|.|..::   |:|..  :||:.|:...|:...||.:|.....|||..||.|:|.:...:  
 Worm   188 NDALIYRKTIDETPSSKSAANIRTQSYDARVLNAPNFVATFAYKEHVYFWFREIASEAIDNNEEP 252

  Fly   262 VIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLP-GEYPYYFDEIQGMT----YAESESIL 321
            .||:||||||||| .||.:...:.|||:|||||||||| |..|:||:|::.::    ...:..::
 Worm   253 QIYARVARVCKND-KGGARPANERWTSYLKARLNCSLPSGSSPFYFNELKAVSDPIDAGNNNHVV 316

  Fly   322 YATFRTSGSSIFGSAVCAYNLSSINAAFD-GPFKQQEHSDAAWKTVNTNQRSQFQCGTSSIGHWL 385
            |..|.|..|.:..||||.:::..|...|| |.||.|.::.:.|...|.|:..:.:.|:.|     
 Worm   317 YTVFSTPDSDVRMSAVCKFSMKKIREEFDNGTFKHQNNAQSMWMAFNRNEVPKPRPGSCS----- 376

  Fly   386 ESSRYQLMDEAVQPIGAEPLYHSKL---------EQFGRLALDIINTKTEQVH--------VLFV 433
             ....:|.:..|..|...||.|..:         |...|..|..| |...:|.        :||:
 Worm   377 -PDSTKLPENTVSFILHHPLLHRPIPSVAAPLLVEGADRADLTQI-TVLPRVRAVGGHNYDILFI 439

  Fly   434 ASSGNHIKKLSVKYDGDGVQTCLVELWQADDTGTSSLLNMAYLKVSDSLYLGTDLALTRIPAQHC 498
            .:|...:.|: |:.||:........::|..    ..::|:  |...:|:.:.:...:..:|..:|
 Worm   440 GTSDGKVLKV-VEVDGNATVIQSATVFQRG----VPIVNL--LTTKESVVIVSADEIASLPVHNC 497

  Fly   499 SRHVSQSSCLNSMDPYCGWNELVERCM 525
            ::..|.|.|:...||:|.|:..:.||:
 Worm   498 AQQTSCSKCVQLQDPHCAWDSSIARCV 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 139/451 (31%)
PSI 497..546 CDD:279745 10/29 (34%)
TSP1 556..607 CDD:214559
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
smp-1NP_001379344.1 Sema_1A 49..497 CDD:200498 139/453 (31%)
PSI 496..547 CDD:214655 10/29 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5741
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.860

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