DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and SEMA3C

DIOPT Version :10

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:NP_001337049.1 Gene:SEMA3C / 10512 HGNCID:10725 Length:769 Species:Homo sapiens


Alignment Length:523 Identity:144/523 - (27%)
Similarity:254/523 - (48%) Gaps:73/523 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 YISYQDLMSTAKRFY---DPETTWYSEMLFDVARNQVIVGARDTLYRMSFDLEPLERAS--WGAT 111
            |:::.:|..|....|   ......|..:|.|..::::.||::|.:..::.:....|..|  |.|:
Human    48 YLTFDELRETKTSEYFSLSHHPLDYRILLMDEDQDRIYVGSKDHILSLNINNISQEALSVFWPAS 112

  Fly   112 PSEIAMCQAKGQS-ERWCRNYVRVLHSYGENQLYACGTNAFQPSCSW----RQMEN---LTVTGV 168
            ..::..|:..|:. ...|.|:|||:.::....||.||:.||.|.|::    |:.|:   :..:..
Human   113 TIKVEECKMAGKDPTHGCGNFVRVIQTFNRTHLYVCGSGAFSPVCTYLNRGRRSEDQVFMIDSKC 177

  Fly   169 DSGVVKCPFHPQANSTSLLQSNGQLFVGTATDFSGSDVAILRTGVESNKRFLRTKQYNNNWLSGA 233
            :||..:|.|:|..|:.|:: .|.:||.|...||.|:|.||.|:..:.|.  :||.|:|:.|||..
Human   178 ESGKGRCSFNPNVNTVSVM-INEELFSGMYIDFMGTDAAIFRSLTKRNA--VRTDQHNSKWLSEP 239

  Fly   234 QFV-------GSFEAGHFVYFLLRESAAEHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLK 291
            .||       |:......|||..:|...::....|.|:|.:||:|.||.||...|: :.||:|||
Human   240 MFVDAHVIPDGTDPNDAKVYFFFKEKLTDNNRSTKQIHSMIARICPNDTGGLRSLV-NKWTTFLK 303

  Fly   292 ARLNCSLPGE--YPYYFDEIQGMTYAESE----SILYATFRTSGSSIFGSAVCAYNLSSINAAFD 350
            |||.||:..|  ...:|||::.:...|::    :::|..|.||.|...|||||.|:||.|...|:
Human   304 ARLVCSVTDEDGPETHFDELEDVFLLETDNPRTTLVYGIFTTSSSVFKGSAVCVYHLSDIQTVFN 368

  Fly   351 GPFKQQEHSDAAWKTVNTNQRSQF-QCGTSSIGHWLESSR---------------YQLMDEAVQP 399
            |||..:|..:  .:.::...|..: :.||...|.:..:.|               :.||..::.|
Human   369 GPFAHKEGPN--HQLISYQGRIPYPRPGTCPGGAFTPNMRTTKEFPDDVVTFIRNHPLMYNSIYP 431

  Fly   400 IGAEPL-------YHSKLEQFGRLALDIINTKTEQVHVLFVASSGNHIKKLSVKYDGDGVQTCLV 457
            |...||       |     ::.::|:|.:|....:.||||:.:....::|:.|....:.|...|:
Human   432 IHKRPLIVRIGTDY-----KYTKIAVDRVNAADGRYHVLFLGTDRGTVQKVVVLPTNNSVSGELI 491

  Fly   458 ----ELWQADDTGTSSLLNMAYLKVSDSLYLGTDLALTRIPAQHCSRHVSQSSCLN---SMDPYC 515
                |:::    ..:.:..|........||:.::..::::....|  |:..::|.:   :.||||
Human   492 LEELEVFK----NHAPITTMKISSKKQQLYVSSNEGVSQVSLHRC--HIYGTACADCCLARDPYC 550

  Fly   516 GWN 518
            .|:
Human   551 AWD 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 133/483 (28%)
PSI 497..546 CDD:396154 8/25 (32%)
TSP1 556..607 CDD:214559
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
SEMA3CNP_001337049.1 Sema_3C 63..532 CDD:200512 132/483 (27%)
PSI 531..568 CDD:214655 8/25 (32%)
Ig_Sema3 592..682 CDD:409455
Ig strand A 592..598 CDD:409455
Ig strand B 603..611 CDD:409455
Ig strand C 617..623 CDD:409455
Ig strand C' 625..628 CDD:409455
Ig strand D 637..641 CDD:409455
Ig strand E 644..651 CDD:409455
Ig strand F 657..666 CDD:409455
Ig strand G 669..682 CDD:409455
Blue background indicates that the domain is not in the aligned region.

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