DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and SEMA6B

DIOPT Version :9

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:XP_011525941.1 Gene:SEMA6B / 10501 HGNCID:10739 Length:894 Species:Homo sapiens


Alignment Length:482 Identity:165/482 - (34%)
Similarity:248/482 - (51%) Gaps:55/482 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 VIVGARDTLYRMSFDLEP--------LERASWGATPSEIAMCQAKGQSERWCRNYVRVLHSYGEN 141
            :.:|.||.|||:  :|||        ..:.:|.:.||:|.:|:.||:.|..|||:|:||....|:
Human    77 LFIGDRDNLYRV--ELEPPTSTELRYQRKLTWRSNPSDINVCRMKGKQEGECRNFVKVLLLRDES 139

  Fly   142 QLYACGTNAFQPSCSWRQMENLTVTGVD-SGVVKCPFHPQANSTSLLQSNGQLFVGTATDFSGSD 205
            .|:.||:|||.|.|:...::.|...|.: ||:.:||:.|:..:.:|. |:|.||..|.|||...|
Human   140 TLFVCGSNAFNPVCANYSIDTLQPVGDNISGMARCPYDPKHANVALF-SDGMLFTATVTDFLAID 203

  Fly   206 VAILRTGVESNKRFLRTKQYNNNWLSGAQFVGSFEAGHFVYFLLRESAAEHMSCGKVIYSRVARV 270
            ..|.|:  ..::..|||.::::.|.....||.:.|.|..|||..||.|.|.....||:.||||||
Human   204 AVIYRS--LGDRPTLRTVKHDSKWFKEPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARV 266

  Fly   271 CKNDVGGGGQLLRDNWTSFLKARLNCSLPGEYPYYFDEIQGMTYAES---ESILYATFRTSGSSI 332
            |||||||..::|...||||||||||||:||:..:||:.:|.:|...|   ..::.|.|.|..:||
Human   267 CKNDVGGSPRVLEKQWTSFLKARLNCSVPGDSHFYFNVLQAVTGVVSLGGRPVVLAVFSTPSNSI 331

  Fly   333 FGSAVCAYNLSSINAAFDGPFKQQEHSDAAWKTVNTNQ--RSQFQCGTSSIGHWLESS------- 388
            .||||||::|:.:.|.|:|.|::|:..::.|..|..:|  |.:..|..:....:..||       
Human   332 PGSAVCAFDLTQVAAVFEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDDIL 396

  Fly   389 ----RYQLMDEAVQPIGAEPLYHSKL--EQFGRLALDIINTKTEQVHVLFVASSGNHIKKLSVKY 447
                .:.||||||..:|..|.....|  .|..|:|:|:.........|:|:.|....:.|..|:.
Human   397 NFVKTHPLMDEAVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGTVLKFLVRP 461

  Fly   448 DG-----DGVQTCL--VELWQAD--------DTGTSSLLNMAYLKVSDSLYLGTDLALTRIPAQH 497
            :.     .|:...|  .|.::.|        :|| ..||::.....|..|.......:.|:|...
Human   462 NASTSGTSGLSVFLEEFETYRPDRCGRPGGGETG-QRLLSLELDAASGGLLAAFPRCVVRVPVA
R 525

  Fly   498 CSRH-------VSQSSCLNSMDPYCGW 517
            |.::       |...:|:.|.||||||
Human   526 CQQYSGCMKSLVCSRNCIGSQDPYCGW 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 155/452 (34%)
PSI 497..546 CDD:279745 10/28 (36%)
TSP1 556..607 CDD:214559
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
SEMA6BXP_011525941.1 Sema_6B 57..524 CDD:200528 155/452 (34%)
PSI 525..>560 CDD:279745 10/28 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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