DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and sema4gb

DIOPT Version :9

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:XP_003199679.2 Gene:sema4gb / 100534852 ZFINID:ZDB-GENE-111117-1 Length:881 Species:Danio rerio


Alignment Length:508 Identity:142/508 - (27%)
Similarity:218/508 - (42%) Gaps:102/508 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 YSEMLFDVARNQVIVGARDTLYRM----------SFDLEPLERASWGATPSEIAMCQAKGQSERW 127
            ||.:|.:.....:.||||:.:|::          |..||      |.|:..:...|.:||::.:.
Zfish    56 YSSLLLEDGPGVLYVGAREAIYKLDTANISDTNNSLTLE------WAASADQKRQCLSKGKNNQT 114

  Fly   128 -CRNYVRVLHSYGENQLYACGTNAFQPSCSWRQMENLTVTGVDSGVVKCPFHPQANSTSLLQSNG 191
             |.|:||.|..|.:..||.|||:||:|.|::..:...|....:.|..|||:.|....|..: .:|
Zfish   115 ECYNHVRFLDRYNDTHLYTCGTHAFRPRCAYIDVARFTFVRFEEGKEKCPYDPTKGYTGFI-IDG 178

  Fly   192 QLFVGTATDFSGSDVAILRTGVESNKRF--LRTKQYNNNWLSGAQFVGSFEAGHFVYFLLRESAA 254
            :::  :|:.:...::|.:|    .|..|  ||.......||..:.||||        .|||||..
Zfish   179 EMY--SASQYEFRNIADIR----RNFPFPNLRIDDSPTRWLLESDFVGS--------ALLRESIN 229

  Fly   255 EHMSCGKVIY-------------------SRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPG 300
            ..:.....:|                   :|||||||.|:||...|.| .|||||||||.|::| 
Zfish   230 SSIGDDDKLYFFFTERNTEPTAYSIQTKVARVARVCKGDIGGQRTLQR-KWTSFLKARLVCAIP- 292

  Fly   301 EYPYYFDEIQGMTYAES----ESILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQQEHSDA 361
            :|...|:.::.:...|.    :|:.|..|.....::..||||.|:|..|..||:|||  .|..|:
Zfish   293 DYELQFNVLRSVFVVEGSNVHDSVFYGIFGLEWRNVKMSAVCRYSLKDIQTAFNGPF--MELQDS 355

  Fly   362 AWK--TVNTNQRSQFQCGTSS-IGHWLESS------------RYQLMDEAVQPIGAEPLYHSKLE 411
            .|:  |..........|.|.. .|..:.||            |:.||...:||:...||...|  
Zfish   356 KWREYTGKVPDPRPGSCITDEHRGKLINSSRDLPDNTLNFVRRHPLMSTQIQPVEGRPLLLQK-- 418

  Fly   412 QFGRLALDIINTKTEQVHVLFVASSGNHIKKLSVKYDGDGVQTCL-----------VELWQADDT 465
                 |.|......:||..|    .|.....|.:..|...:|..:           ::|:|.   
Zfish   419 -----AADYTKIIVQQVEGL----DGRTYDMLFIGTDEGWLQRAVKIIDRVHIIEELQLFQE--- 471

  Fly   466 GTSSLLNMAYLKVSDSLYLGTDLALTRIPAQHCSRHVSQSSCLNSMDPYCGWN 518
             ...::||...:..:|:|:.....|.::|...|.|:.|...|:.:.||.|||:
Zfish   472 -KQPIINMVISQKQNSIYVSGASGLVQVPLS
SCERYTSCYDCVFARDPLCGWD 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 133/484 (27%)
PSI 497..546 CDD:279745 9/22 (41%)
TSP1 556..607 CDD:214559
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
sema4gbXP_003199679.2 Sema_4G 47..501 CDD:200523 133/484 (27%)
PSI 502..>541 CDD:279745 9/22 (41%)
Ig 561..646 CDD:299845
IG_like 566..643 CDD:214653
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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