DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and sema4b

DIOPT Version :10

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:XP_031755080.1 Gene:sema4b / 100489037 XenbaseID:XB-GENE-922109 Length:850 Species:Xenopus tropicalis


Alignment Length:603 Identity:160/603 - (26%)
Similarity:282/603 - (46%) Gaps:88/603 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 KRFYDPETTWYSEMLFDVARNQVIVGARDTLYRM-SFDLEPLE---RASWGATPSEIAMCQAKGQ 123
            |.|.....|:::.:|.....:.:.|||::.|:.: |.|....:   :.:|.|...:...|..||:
 Frog    54 KTFEADGVTYFTTLLLGKDGSALYVGAQEALFSLNSTDFTSADYHSKIAWQADEEKKKECAFKGK 118

  Fly   124 S-ERWCRNYVRVLHSYGENQLYACGTNAFQPSCSWRQMENLTVTG-------VDSGVVKCPFHPQ 180
            . :|.|:||:::|.......||.|||.||.|:|::.::.:.::..       ::.|.|:|||.|:
 Frog   119 DPQRDCQNYIKILLQLNSTHLYTCGTFAFSPTCTYIKISDFSLEKNALGHPILEDGKVRCPFDPE 183

  Fly   181 ANSTSLLQSNGQLFVGTATDFSGSDVAILRTGVESNKRFLRTKQYNNNWLSGAQFVG------SF 239
            .|||::: .:|:::.||.::|.|::..|.::  ..::..|:|:. :..||....|||      |.
 Frog   184 YNSTAIM-VDGEMYAGTVSNFQGNEPIIYKS--HDSRITLKTEN-SLYWLQDPAFVGSAYIQESL 244

  Fly   240 EAGH------FVYFLLRESAAEHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSL 298
            ..|:      .:|:...|:..|.......|.||:|||||.|: ||.::|:..|||||||:|.||.
 Frog   245 PKGNPVGDDDKIYYFFSETGKEFDFFENTIVSRIARVCKGDL-GGERVLQRRWTSFLKAQLICSC 308

  Fly   299 PGE-YPYYFDEIQGM---TYAE---SESILYATFRT------SGSSIFGSAVCAYNLSSINAAFD 350
            ||: :|  |:.::.|   |..|   ..:|.|..|.:      :||    |||||:::..:..||:
 Frog   309 PGDGFP--FNVLKDMFVLTPGEEHWKSTIFYGVFTSQWNKGGAGS----SAVCAFSMDEVQNAFN 367

  Fly   351 GPFKQQEHSDAAWKTVNTNQRSQFQ---CGTSSIGHWLESSRYQ-------------LMDEAVQP 399
            |.||:.......|.|. ||...:.:   |.|:|......:|..|             |||.|:: 
 Frog   368 GLFKEVNRETQQWYTY-TNSVPEPRPGACITNSARDKKINSSLQMPDRVLNFVKDHFLMDSAIR- 430

  Fly   400 IGAEPLYHSKLEQFGRLALDIINTKTEQVHVLFVASSGNHI-KKLSVKYDGDGVQTCLVELWQAD 463
              ::||......::.::::..:....:...|||:.:....: |.:||......::.  ::|:| |
 Frog   431 --SQPLLLQSQIRYQQISVQRVRGLKKTYDVLFLGTDDGRLHKAVSVNKMVHIIEE--IKLFQ-D 490

  Fly   464 DTGTSSLLNMAYLKVSDSL-YLGTDLALTRIPAQHCSRHVSQSSCLNSMDPYCGWNELVERCMPQ 527
            ......||    |..|..| |..:..|:.::|..:||.:.|...|:.|.||||.||:.....:|.
 Frog   491 MQPVQELL----LDPSKGLIYASSRSAVVQVPVSNCSMYRSCGECILSRDPYCAWNKKGCHSVPH 551

  Fly   528 PQDSSVLQHWHQAPQITCPVLNAPIDGGWSTWSPWAVCQQHEQPDSNCQCRQRSC-NNPQPQHGG 591
            ....:..|||.|      .:.:|..|......:......:..:||.: :|::.|. :||.   ..
 Frog   552 HTHDTKNQHWVQ------DIEDANTDAHCKPSNSTEAIGRAGKPDES-ECQEISMESNPA---NT 606

  Fly   592 ATCEGISTQVTNCTQHGG 609
            ..|:.:|...:....|.|
 Frog   607 LPCKLLSNLASRVWLHNG 624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 131/485 (27%)
PSI 497..546 CDD:396154 16/48 (33%)
TSP1 556..607 CDD:214559 8/51 (16%)
TSP1 610..663 CDD:214559 160/603 (27%)
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
sema4bXP_031755080.1 Sema 55..520 CDD:472829 131/486 (27%)
PSI 521..564 CDD:214655 16/48 (33%)
Ig 594..669 CDD:472250 8/34 (24%)
Ig strand B 605..609 CDD:409456 0/3 (0%)
Ig strand C 617..621 CDD:409456 0/3 (0%)
Ig strand E 637..640 CDD:409456
Ig strand F 650..655 CDD:409456
Blue background indicates that the domain is not in the aligned region.

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