DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5c and sema6bb

DIOPT Version :10

Sequence 1:NP_611293.3 Gene:Sema5c / 37066 FlyBaseID:FBgn0284221 Length:1093 Species:Drosophila melanogaster
Sequence 2:XP_073766334.1 Gene:sema6bb / 100148883 ZFINID:ZDB-GENE-081105-129 Length:950 Species:Danio rerio


Alignment Length:554 Identity:173/554 - (31%)
Similarity:267/554 - (48%) Gaps:61/554 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ILKLPKMFSQL-WLLLILSLLTLEGPQPSTGSGYTTKSSVDLLEND--SRYISYQDLMSTAKRFY 66
            ::.:.|.|.:| |||.::..:..|.|.|           ::.:..|  .:|..:......:...:
Zfish    77 MMTVAKPFIRLFWLLRLVCAVFPEEPGP-----------LNFVRTDVVRKYPVFLGRPHHSTLRH 130

  Fly    67 DPETTWYSEMLFDVARNQVIVGARDTLYRMSFD------LEPLERASWGATPSEIAMCQAKGQSE 125
            :|   .:.:.:..|.|. :.:||||.|:|:..|      :...::.:|.:..::|.:|:.||:.|
Zfish   131 EP---LHIQRILQVNRT-LYIGARDDLFRVELDNVVGEEMFYSKKRTWESNKNDIRICRMKGKHE 191

  Fly   126 RWCRNYVRVLHSYGENQLYACGTNAFQPSCSWRQMENLTVTG-VDSGVVKCPFHPQ-ANSTSLLQ 188
            ..||||::||.| .:..|:.||||||.|.|:....:.|.:.| ..||:.:||:.|: ||.....:
Zfish   192 DECRNYMKVLLS-RQGGLFICGTNAFNPLCANYTGDTLEMVGETVSGMARCPYDPKHANVALFAE 255

  Fly   189 SNGQLFVGTATDFSGSDVAILRTGVESNKRFLRTKQYNNNWLSGAQFVGSFEAGHFVYFLLRESA 253
            .|  |:..|.|||...|..|.|:  ..:...|||.::::.|.....||.:.|.|..|||..||.|
Zfish   256 RN--LYTATVTDFLAIDAVIYRS--LGDNPALRTVKHDSKWFREPYFVSAVEWGPHVYFFFREMA 316

  Fly   254 AEHMSCGKVIYSRVARVCKNDVGGGGQLLRDNWTSFLKARLNCSLPGEYPYYFDEIQG---MTYA 315
            .|.....||:.||||||||.|.||..::|...||||||||||||:||:..:||:.:..   :...
Zfish   317 MEFNYLEKVVVSRVARVCKADQGGSQRVLEKQWTSFLKARLNCSIPGDSHFYFNLLHSTSPIIRM 381

  Fly   316 ESESILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQQEHSDAAWKTVNTN----------- 369
            ....|:.|.|.|..:||.||||||:::..:...|||.||:|:..::.|..|...           
Zfish   382 HGRDIILAVFSTPSNSIPGSAVCAFDMEQLAGVFDGRFKEQKSPESIWTPVPDEALPKPRPGGCA 446

  Fly   370 -QRSQFQCGTSSIGHWLESSR-YQLMDEAVQPIGAEP-LYHSKLE-QFGRLALDIINTKTEQVHV 430
             |.|:|....|.....|...: :.||||||..:|..| :..:.:. |..::.:|..........|
Zfish   447 VQGSKFNSSNSFPDDMLTFVKTHPLMDEAVPSLGQRPWIVRTMVRYQLNKMVVDTNAGPYGNQTV 511

  Fly   431 LFVASSGNHIKKLSVKYDGDGVQT----CLVEL--WQADDTGTSS-----LLNMAYLKVSDSLYL 484
            ||:.||...|.|..|..:.|...|    .|.|.  :..|..||.|     ||::...::|.||.|
Zfish   512 LFLGSSRGTILKFLVTPNRDNTVTNNNVFLEEFEGYNPDRCGTDSPQARQLLSLTLDRISHSLLL 576

  Fly   485 GTDLALTRIPAQHCSRH-VSQSSCLNSMDPYCGW 517
            .....:.::|...|..: ....:|:.|.||||||
Zfish   577 TFPSCVIKVPVARCQLYSACMKNCIASRDPYCGW 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5cNP_611293.3 Sema_5C 65..496 CDD:200526 153/467 (33%)
PSI 497..546 CDD:396154 9/22 (41%)
TSP1 556..607 CDD:214559
TSP1 610..663 CDD:214559
TSP1 674..725 CDD:214559
TSP1 802..834 CDD:214559
TSP1 853..901 CDD:214559
TSP1 906..953 CDD:214559
sema6bbXP_073766334.1 None
Blue background indicates that the domain is not in the aligned region.

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