DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stau and stau1

DIOPT Version :9

Sequence 1:NP_476751.1 Gene:stau / 37065 FlyBaseID:FBgn0003520 Length:1026 Species:Drosophila melanogaster
Sequence 2:XP_012827226.2 Gene:stau1 / 549296 XenbaseID:XB-GENE-920408 Length:719 Species:Xenopus tropicalis


Alignment Length:873 Identity:272/873 - (31%)
Similarity:379/873 - (43%) Gaps:250/873 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 NNSNSNYAPKAILQNTY---RNQKVVVPPVVQEVTPVPEPPVTTNNATTNSTSNSTVIASEPVTQ 264
            |.|....:|.|.|..:.   :||.          :|:|:|....:.|:...:.|    |..|:..
 Frog     4 NMSQVPNSPAATLSGSQILNKNQH----------SPLPQPLSIPSTASPLPSEN----AGRPLQN 54

  Fly   265 EDTSQKPETRQEPASADDHVSTGNIDATGALSNEDTSSSGRGGKDKTPMCLVNELARYNKITHQY 329
            ........|...||:                    .||:....|:||||||||||||:|||...|
 Frog    55 SALPSPSVTSSSPAA--------------------VSSNMANPKEKTPMCLVNELARFNKIQPVY 99

  Fly   330 RLTEERGPAHCKT-----------------------FTVTLMLGDEEYSADGFKIKKAQHLAASK 371
            :|..|:||||.|.                       |||.|.|||:.:.|:|..||||||.||:|
 Frog   100 KLLSEQGPAHSKVIPLGRWQDYSLLERVGEDRPRQMFTVQLTLGDQYWEAEGTSIKKAQHAAAAK 164

  Fly   372 AIEETMYKHPPPKIR--RSEEGGPMRTHITPTVELNALAMKLGQR-TFYLLDPTQIPPTDSIVPP 433
            |:|.|  |:|.|.:|  |.|...|  ..||||||||||.||||:: |:..|||            
 Frog   165 ALEGT--KYPKPTVRPVRGERKYP--DSITPTVELNALCMKLGRKPTYKPLDP------------ 213

  Fly   434 EFAGGHLLTAPGPGMPQPPPPPAYALRQRLGNGFVPIPSQPMHPHFFHGPGQRPFPPKFPSRFAL 498
             :.|..               .||....| |.|:        .|.:|:                 
 Frog   214 -YTGIR---------------SAYNYNMR-GGGY--------PPRYFY----------------- 236

  Fly   499 PPPLGAHVHHGPNGPFPSVPTPPSKITLFVGKQKFVGIGRTLQQAKHDAAARALQVLKTQAI--- 560
                          |||..|. ..::.|.:|.|:|.|.|||.|.|||||||:||:.|:.:.:   
 Frog   237 --------------PFPVAPI-LYQVELSIGGQQFHGKGRTRQAAKHDAAAKALKSLQHEPLPDK 286

  Fly   561 ------SASEEALEDSMDEGDKKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSI 619
                  :|.||.|        .||.||||.||.:||||:|:|:|.:|.||.|||:|:|..|||..
 Frog   287 PAVNGKAADEENL--------NKSEISQVFEIALKRNMSVNFEVTKETGPPHMKSFVTKVIVGEF 343

  Fly   620 VTEGEGNGKKVSKKRAAEKMLVELQKLPPLTPTKQTPLKRIKVKTPGKSGAAAREGSVVSGTDGP 684
            :.||||..||:|||.||..:|.||:||||| ||.:....:||.||.          |:|.....|
 Frog   344 LGEGEGKSKKISKKNAAISVLEELRKLPPL-PTVEKMKPKIKKKTK----------SIVKLPTSP 397

  Fly   685 TQTGKPERRKRLNPPKDKLIDMDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVME 749
                                :.....|||::|.|:||.:|:|||.:.||.:.|  ..|||||||:
 Frog   398 --------------------EYGQGMNPISRLAQIQQAKKDKEPEYILITERG--LPRRREFVMQ 440

  Fly   750 VSASGSTARGTGNSKKLAKRNAAQALFELLEAVQVTPTNETQSSEECSTSATMSAVTAPAVEATA 814
            |.....:|.|.|.:||:||||||:.:.||| ..:|.|                   ..|......
 Frog   441 VKVGNHSAEGMGTNKKVAKRNAAENMLELL-GFKVPP-------------------PPPKPALKT 485

  Fly   815 EGKVPMVATPVGPMPGILILRQNKKPAKKRDQIVIVKSNVESKEEEANKEVAVAAEENSNNSANS 879
            |.|:|:                 |||...| ::...:..........||:.......:|:....:
 Frog   486 EEKLPL-----------------KKPGDGR-KVTFYEPGSGEDTSNNNKDDEFRMPFHSHQQLPA 532

  Fly   880 G-----DSSNSSSGDSQA--TEAASESALNTSTGSNTSGVSSNSSNVGANTDGNNHAESKNNTES 937
            |     .....:.|.:|.  |:..:..|.|.:..:.|:.::......|.:...:...::.||   
 Frog   533 GILPMVPEVAQAVGVNQGLHTKEFNRVAPNPAKATVTAMIARELLYAGISPTADTILKNNNN--- 594

  Fly   938 SSNSTSNTQSAGVHM-------KEQLLYLSKLLDFEVNFSDYPKGNHNEFLTIVTLSTHPPQICH 995
                     :||:.:       .|||.|||::...||.:.|:||.|.|||::::..|:.||.|.|
 Frog   595 ---------AAGLVLHGPFTRPSEQLNYLSRVQGVEVEYKDFPKNNKNEFVSLINCSSQPPLISH 650

  Fly   996 GVGKSSEESQNDAASNALKILSKLGLNN 1023
            |:||..|...:.||.|.||:||:|...|
 Frog   651 GIGKDVESCHDMAALNILKLLSELDQQN 678

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stauNP_476751.1 DSRM 312..375 CDD:214634 40/85 (47%)
DSRM <529..555 CDD:294045 17/25 (68%)
DSRM 579..644 CDD:214634 37/64 (58%)
DSRM 712..780 CDD:214634 34/67 (51%)
Staufen_C <953..1020 CDD:293091 31/66 (47%)
stau1XP_012827226.2 DSRM_SF 78..154 CDD:412133 33/75 (44%)
DSRM_STAU1_rpt2 200..264 CDD:380710 28/132 (21%)
DSRM_STAU1_rpt3 301..367 CDD:380712 38/65 (58%)
DSRM_STAU1_rpt4 394..474 CDD:380714 37/102 (36%)
Staufen_C 565..675 CDD:374568 37/121 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 76 1.000 Domainoid score I8790
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 300 1.000 Inparanoid score I2644
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D355202at33208
OrthoFinder 1 1.000 - - FOG0002435
OrthoInspector 1 1.000 - - otm49185
Panther 1 1.100 - - O PTHR46054
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1848
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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