DRSC/TRiP Functional Genomics Resources

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Protein Alignment stau and Prkra

DIOPT Version :9

Sequence 1:NP_476751.1 Gene:stau / 37065 FlyBaseID:FBgn0003520 Length:1026 Species:Drosophila melanogaster
Sequence 2:XP_030106794.1 Gene:Prkra / 23992 MGIID:1344375 Length:365 Species:Mus musculus


Alignment Length:383 Identity:90/383 - (23%)
Similarity:133/383 - (34%) Gaps:109/383 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   388 SEEGGPMRTHITPTVELNALAMKLGQRTFYLLDPTQIPPTDSIVPPEFAGGHLLTAPGPGMPQPP 452
            :|.||               |.:||:...:...|.:.|.:.|......|||......|....|..
Mouse     2 AERGG---------------AERLGREGVWPALPRRGPASPSFSSCPLAGGRQAAIRGASKRQRG 51

  Fly   453 PPPAYALRQRLGN-----GFVPI---------PSQPMHPHFFHGPGQRPFPPKFPSRFALPPPLG 503
            ..|       |||     |...|         ||.....|..|.....|...:....|:|...:.
Mouse    52 HAP-------LGNWPTWRGRTQIHTSLDCCGQPSLLAMSHSRHRAEAPPLQREDSGTFSLGKMIT 109

  Fly   504 AHVHHGP------------NGPF---------PSVPTPPSKITLFVGKQKFVGIGRTLQQAKHDA 547
            |.....|            |.|.         ..|||...::|  ||.....|.|.:.:.|||.|
Mouse   110 AKPGKTPIQVLHEYGMKTKNIPVYECERSDVQVHVPTFTFRVT--VGDITCTGEGTSKKLAKHRA 172

  Fly   548 AARALQVLKTQAISASEEALEDSMDEGDKKSPISQVHEIGIKRNMTVH-------FKVLREEGPA 605
            |..|:.:||..|....  |:.|.:.....|.|.:|::.||..:.:.:|       :.:.:|.|||
Mouse   173 AEAAINILKANASICF--AVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPA 235

  Fly   606 HMKNFITACIVGSIVTEGEGNGKKVSKKRAAEKMLVELQKLPP-----LT------------PTK 653
            |.:.:.|.|.:.|.:..|:|..||.:|:.||||.|.:...:.|     ||            ..:
Mouse   236 HKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLR 300

  Fly   654 QTP------LKRIKVKTPGK------SGAAAREGSVVSGTD------------GPTQT 687
            .:|      |||..:..|..      |..|:.:|..::..|            |||:|
Mouse   301 NSPGEKINLLKRSLLSLPNTDYIQLLSEIASEQGFNITYLDIGQLWMGGQASIGPTRT 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stauNP_476751.1 DSRM 312..375 CDD:214634
DSRM <529..555 CDD:294045 9/25 (36%)
DSRM 579..644 CDD:214634 23/71 (32%)
DSRM 712..780 CDD:214634
Staufen_C <953..1020 CDD:293091
PrkraXP_030106794.1 DSRM_PRKRA_rpt1 113..183 CDD:380718 19/71 (27%)
DSRM_PRKRA_rpt2 207..273 CDD:380720 21/65 (32%)
DSRM_SF 320..>350 CDD:381777 4/29 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3732
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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