Protein Alignment stau and Tarbp2

DIOPT Version :9

• Sequence 1: NP_476751.1
• Gene: stau / 37065
• FlyBaseID: FBgn0003520
• Length: 1026
• Species: Drosophila melanogaster
• Sequence 2: NP_033345.2
• Gene: Tarbp2 / 21357
• MGIID: 103027
• Length: 365
• Species: Mus musculus
• Alignment Length: 473
• Identity: 98/473 - (20%)
• Similarity: 164/473 - (34%)
• Gaps: 154/473 - (32%)

  Fly   566 ALEDSMDEGDKKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTEGEGNGKKV 630
            ::|..:.....|:|||.:.|.|.:...|..:.:|:.||.||..||.....||.....|:|..||.
Mouse    18 SIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKA 82

  Fly   631 SKKRAAEKMLVELQ---KLPPL------------TPTKQTPLKRIKVKTPGKSGAAAREGSVVSG 680
            :|.:|||..|..|:   .|.|.            :|.:.||:...:...|..|....|...:
Mouse    83 AKHKAAEVALKHLKGGSMLEPALEDSSSFSLLDSSPPEDTPVVAAEAAAPVPSAVLTRSPPM--- 144

  Fly   681 TDGPTQTGKPERRKRLNPPKDKLIDMDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETARRRE 745
                      |.:..::|.:.:.       ||:..|.:|...:..:.|.:.:..::|  .|.|:|
Mouse   145 ----------EMQPPVSPQQSEC-------NPVGALQELVVQKGWRLPEYMVTQESG--PAHRKE 190

  Fly   746 FVMEVSASGSTARGTGNSKKLAKRNAAQALFELLEAVQVTPTNETQSSEECSTSATMSAVTAPAV 810
            |.|..........|:|.||||||||||..
Mouse   191 FTMTCRVERFIEIGSGTSKKLAKRNAAAK------------------------------------ 219

  Fly   811 EATAEGKVPMVATPVGPMPGILILRQNKKPAKKRDQIVIVKSNVESKEEEANKEVAVAAEENSNN 875
                                 ::||.:..|...||       ..|::.::.:..:.|::..:...
Mouse   220 ---------------------MLLRVHTVPLDARD-------GNEAEPDDDHFSIGVSSRLDGLR 256

  Fly   876 SANSG---DSSNSSSGDS----QATEAASESALNTSTGSNTSGVSSNSSNVGANTDGNNHAESKN 933
            :...|   ||..:|.|:.    ::....|..||.::..|..|.:|
Mouse   257 NRGPGCTWDSLRNSVGEKILSLRSCSVGSLGALGSACCSVLSELS-------------------- 301

  Fly   934 NTESSSNSTSNTQSAGVHMKEQLLYLSKLLDFEVNFSDYPKGNHNEFLTIVTLSTHPPQICHGVG 998
                               :||..::|.|...|::.|...:       .:|.|||.|..:|:|..
Mouse   302 -------------------EEQAFHVSYLDIEELSLSGLCQ-------CLVELSTQPATVCYGSA 340

  Fly   999 KSSEESQNDAASNALKIL 1016
            .:.|.::.|||..||:.|
Mouse   341 TTREAARGDAAHRALQYL 358

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
stau	NP_476751.1	DSRM	312..375	CDD:214634
		DSRM	<529..555	CDD:294045
		DSRM	579..644	CDD:214634	24/64 (38%)
		DSRM	712..780	CDD:214634	22/67 (33%)
		Staufen_C	<953..1020	CDD:293091	20/64 (31%)
Tarbp2	NP_033345.2	Sufficient for interaction with PRKRA. /evidence=ECO:0000255|HAMAP-Rule:MF_03034	22..105		28/82 (34%)
		DSRM_TARBP2_rpt1	27..98	CDD:380719	26/70 (37%)
		Sufficient for interaction with PRKRA. /evidence=ECO:0000255|HAMAP-Rule:MF_03034	151..233		27/147 (18%)
		DSRM_TARBP2_rpt2	158..224	CDD:380681	24/124 (19%)
		Sufficient for interaction with DICER1. /evidence=ECO:0000255|HAMAP-Rule:MF_03034	227..365		36/185 (19%)
		Sufficient for interaction with PRKRA. /evidence=ECO:0000255|HAMAP-Rule:MF_03034	286..365		25/119 (21%)
		DSRM_TARBP2_rpt3	291..362	CDD:380722	23/114 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3732
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810