Protein Alignment Muc55B and Khdc3

DIOPT Version :9

• Sequence 1: NP_001286561.1
• Gene: Muc55B / 37057
• FlyBaseID: FBgn0034294
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_001100307.1
• Gene: Khdc3 / 300826
• RGDID: 1311617
• Length: 434
• Species: Rattus norvegicus
• Alignment Length: 248
• Identity: 81/248 - (32%)
• Similarity: 101/248 - (40%)
• Gaps: 30/248 - (12%)

  Fly   216 APVSTTPEAPVTTTPVAPSTTETPVPTTPVAPSTTEAPVSTTPEAPVSTTPVAPSTTEAPVPTTP 280
            |..:||...||.....|.......|....:.|:..:...:.|..|||....||..    ||| ..
  Rat   130 ASKATTQPTPVKVRDAATQVAPVQVRDAAIQPAPVKVRDAATQVAPVQVHEVATQ----PVP-VQ 189

  Fly   281 VAPSTTEAPVPTTPVAPSTTEAPVPTTPVAPSTTEAPVPTTPVAPSTTEAPVPTTPVAPSTTEAP 345
            |..:.|: |||.. |..:.|: |||.. |..:.|: |||.. |..:.|: |||.. |..:.|| |
  Rat   190 VRDAATQ-PVPVR-VRDAATQ-PVPVR-VRDAATQ-PVPVR-VRDAATQ-PVPVR-VRDAATE-P 245

  Fly   346 VPTTPVAPSTTEAPVPTTPVAPSTTEAPVPTTPVAPSTTEAPVPTTPVAPSTTEAPVPTTPVAPS 410
            ||......:|..|||.....|  |..|||.....|  |..|||.....|  |..|||.....|
  Rat   246 VPVQVRDAATQPAPVQVRDAA--TQPAPVQVRDAA--TQPAPVQVRDAA--TQPAPVQVRDAA-- 302

  Fly   411 TTEAPVPTTPVASSTTEAPVSTTPVAPSTTEAPV----SSTPESTTEAASTTE 459
            |..|||.....|  |..|||.....|  |..|||    ::|.::..|.|..|:
  Rat   303 TQPAPVQVRDAA--TQPAPVQVRDAA--TQPAPVQVREAATQQTPVEVADDTQ 351

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Muc55B	NP_001286561.1	DUF725	52..170	CDD:283039
Khdc3	NP_001100307.1	Involved in RNA binding. /evidence=ECO:0000250|UniProtKB:Q9CWU5	1..39
		MOEP19	29..112	CDD:406415
		rne	<140..340	CDD:236766	73/225 (32%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	0	0.000