DRSC/TRiP Functional Genomics Resources

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Protein Alignment Elk and Cnga1

DIOPT Version :10

Sequence 1:NP_477009.1 Gene:Elk / 37047 FlyBaseID:FBgn0011589 Length:1284 Species:Drosophila melanogaster
Sequence 2:NP_445949.2 Gene:Cnga1 / 85259 RGDID:621815 Length:683 Species:Rattus norvegicus


Alignment Length:651 Identity:150/651 - (23%)
Similarity:277/651 - (42%) Gaps:113/651 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   222 PEKGGVKTKLKLGNNFMHSTEAPFPEYKTQSIKKSRLILPHYGVFKGIWDWVILVATFYVALMVP 286
            |||...|.|.|      ...:...|:.|.:..||..:::...|.....|.:.|.:...|...|:.
  Rat   117 PEKKKKKEKEK------EKKKEEKPKEKKEEEKKEVVVIDPSGNMYYNWLFCITLPVMYNWTMII 175

  Fly   287 YNAAFAKAD----RQTKVSDVIVEALFIVDILLNFRTTFVSRKGEVVSNSKQIAINYLRG-WFAL 346
            ..|.|.:..    ....:.|.:.:.:::.|:.:..||.:: .:|.:|.:..::...|... .|.|
  Rat   176 ARACFDELQSDYLEYWLIFDYVSDVVYLADMFVRTRTGYL-EQGLLVKDKLKLIEKYKANLQFKL 239

  Fly   347 DLLAALPFDHLYASDLYDGEDSHIHLVKLTRLLRLARLLQKIDRYSQHT-----AMILTLLMFSF 406
            |:|:.:|.|.||....::..:     ::|.||||::|:.:...|....|     ..|..|:|: .
  Rat   240 DVLSVIPTDLLYFKFGWNYPE-----IRLNRLLRISRMFEFFQRTETRTNYPNIFRISNLVMY-I 298

  Fly   407 TLAAHWLACIWY----VIAVKEYEW-FPESNIGWLQLLAERKNASVAILTTAETYSTALYFTFTS 466
            .:..||.||::|    .|......| :|:.|......||.:             |..:||::..:
  Rat   299 VIIIHWNACVYYSISKAIGFGNDTWVYPDVNDPEFGRLARK-------------YVYSLYWSTLT 350

  Fly   467 LTSVGFGNVSANT-----TAEKVFTIIMMLIGALMHAVVFGNVTAIIQRMYSRRSLYESKWRDLK 526
            ||::|      .|     .:|.||.::..|||.|:.|.:.||:.::|..|.:.|:.::|:...:|
  Rat   351 LTTIG------ETPPPVLDSEYVFVVVDFLIGVLIFATIVGNIGSMISNMNAARAEFQSRVDAIK 409

  Fly   527 DFVALHNMPKELKQRIEDYFQTSWSLSHGIDIYETLREFPEELRGDVSMHLHREIL-QLPIFEAA 590
            .::...|:.|::::|:..:|...|:....:|..|.||..|::||.::::::|.:.| ::.||...
  Rat   410 QYMNFRNVSKDMEKRVIKWFDYLWTNKKTVDEREVLRYLPDKLRAEIAINVHLDTLKKVRIFADC 474

  Fly   591 SQGCLKLLSLHIKTNFCAPGEYLIHKGDALNYIYYLCNGSMEVIKDDMVV--AILGKGDLVGSDI 653
            ..|.|..|.|.::....:||:|:..|||....:|.:..|.:.|:.||.:.  .:|..|...| :|
  Rat   475 EAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKLAVVADDGITQFVVLSDGSYFG-EI 538

  Fly   654 NVHLVATSNGQMTATTNSAGQDVVVRSSSDIKALTYCDLKCIHMGGLVEVLRLYPEYQQQFANDI 718
            ::             .|..|.....|.:::||::.|.||.|:....|:|.|..||:.:.......
  Rat   539 SI-------------LNIKGSKAGNRRTANIKSIGYSDLFCLSKDDLMEALTEYPDAKTMLEEKG 590

  Fly   719 QHDLTCNLREGYENQDSDIGPSFPLPSISEDDENREEAEEGGKGEKENGGGPPSGASPLHNISNS 783
            :..|   :::|.    .||.    :.::..|.::.||.....:|..:                  
  Rat   591 RQIL---MKDGL----LDIN----IANLGSDPKDLEEKVTRMEGSVD------------------ 626

  Fly   784 PLHATR-SPLLGMGSPRNQRLHQRGRSLITLRETNKRHRTLNAACSLDRGSFEEP----EPLEEE 843
             |..|| :.:|.......|:|.||         ..|..:.|......:..:.|||    ||.|..
  Rat   627 -LLQTRFARILAEYESMQQKLKQR---------LTKVEKFLKPLIETEFSALEEPGGESEPTESL 681

  Fly   844 Q 844
            |
  Rat   682 Q 682

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ElkNP_477009.1 PAS_9 40..133 CDD:463873
PLN03192 270..>650 CDD:215625 98/402 (24%)
cNMP 586..716 CDD:197516 35/131 (27%)
Cnga1NP_445949.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 34..144 8/32 (25%)
Ion_trans 156..398 CDD:459842 62/267 (23%)
Ion conduction pathway. /evidence=ECO:0000250|UniProtKB:P29973 286..394 32/127 (25%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P29973 353..356 1/8 (13%)
C-linker. /evidence=ECO:0000250|UniProtKB:P29973 396..472 18/75 (24%)
CAP_ED 470..586 CDD:237999 35/129 (27%)
Cyclic nucleotide-binding domain. /evidence=ECO:0000250|UniProtKB:P29973 476..596 34/136 (25%)
CLZ 586..655 CDD:465160 17/107 (16%)
Blue background indicates that the domain is not in the aligned region.

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